Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01077 ATGCCACTCGACCGCCAGTCCCAACACTCGGTCCAAATACGCAGTTCCCTAGACGCCGATGATGACTCCGACCATCTCCATCCAACTCTTTCCACGCCTGCTGTCGTCAATGGAGATGACTGCGAGAATGCCGGAGATGACCTCGTCGTTCCTCCCCTGAACTTCGCCGTTGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCCTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGCCCCGAGCCATATCCTGAGGTCAGCGTGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTCGGAATTGAAGGCTCTAAGGAGCCTTTTGTGAACATTCCAGACGTTACAATTCGAGAGGCACTTAAAGTTATTCTCGATGTGAGGAATCGCCCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGTTGCGTGGTGGGATGCTTCAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTCTTCGATGAGTACCAGAGGTTTGCAGCTGCGAAGGCAAGAGTTTCAGATCAGAGGTTCATCGAACTATTTGACATTTCAGGGTTTAAGTATTTGCCGTCATCATTTTAA 621 49.11 MPLDRQSQHSVQIRSSLDADDDSDHLHPTLSTPAVVNGDDCENAGDDLVVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEVSVDFLKSNGIRLFQFGIEGSKEPFVNIPDVTIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGFKYLPSSF 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9285905 9289058 - CmoCh19G010770.1 Cmo19g01077 404237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01077 206 Pfam Tyrosine phosphatase family 49 197 IPR004861 -
Cmo19g01077 206 Gene3D Protein tyrosine phosphatase superfamily 48 198 IPR029021 -
Cmo19g01077 206 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 206 IPR020422 GO:0006470|GO:0008138
Cmo19g01077 206 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Cmo19g01077 206 PANTHER - 11 117 - -
Cmo19g01077 206 PANTHER - 117 206 - -
Cmo19g01077 206 CDD PFA-DSP_Siw14 48 195 - -
Cmo19g01077 206 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Cmo19g01077 206 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Cmo19g01077 206 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Cmo19g01077 206 PRINTS Plant and fungal dual specificity phosphatase signature 122 136 IPR020428 GO:0016791
Cmo19g01077 206 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 196 IPR029021 -
Cmo19g01077 206 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 117 - -
Cmo19g01077 206 PANTHER TYROSINE-PROTEIN PHOSPHATASE 117 206 - -
Cmo19g01077 206 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02016 Cmo-Chr11:13756868 Cmo19g01077 Cmo-Chr19:9285905 5.96E-125 wgd
Cmo19g01077 Cmo-Chr19:9285905 Cmo02g00063 Cmo-Chr2:325814 9.08E-61 wgd
Cmo19g01077 Cmo-Chr19:9285905 Cmo20g00254 Cmo-Chr20:1227643 2.38E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01077 K18045 - csv:101209768 346.28