Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01082 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCATAAATACGAAGAAGGGGAAGTCTGTGGGATTTGTGGCCATCGGGTTCCCGCTACATCGGAGAAAACTTCGTTGCAATTTGCCGCGTTTCCTTCAGAGATTTTGCCGGAGTTTCTTTATCTGGGAAGCTATGATAACGCTTCCCGCTCTGAACTTTTGAAGACTCAAGGAATCTCCCGCGTTCTTAATACTGTGCCTGATTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGATAAGACTTTACCTTTTGATGATGCAGTTGAATTCCTAGAGCAATGTGAAAGGGACAAGGCTCGTGTTCTGGTGCACTGCATGTCAGGAAAAAACAGGTCTCCAGCTATTGTAATAGCGTTCTTGATGAAATGCAAAGGTTGGAGACTTGCTCAGAGTTATCAGTGGGTTAAAGAGCGGAGGCCATCCGTCGACTTAACTGAACCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCATCCCAAAACACCCTTCCAGTCTTCCCTCCTGTTGGTCTGCCTTCTTTTGGCTTCAACTTCCCAAAGACCAGCGACCCAGTTCCTACAACACCATTCAACACCATTGCTGCAACTTCGATCTTTACCCGCCCAACCGTAGATGTACCGTCCCACGAGTTTACATTCGGTGCTGGGCAGACTCAAAACAGTTTCGCCGCTAATCCACAGATCAACCAGCAGCCACATCCAAATGGGTAA 786 46.56 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQFAAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPDCQNLYKNSFTYHCLQYDKTLPFDDAVEFLEQCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPIYQQLQEYEQKVFGSSQNTLPVFPPVGLPSFGFNFPKTSDPVPTTPFNTIAATSIFTRPTVDVPSHEFTFGAGQTQNSFAANPQINQQPHPNG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9311595 9315323 - CmoCh19G010820.1 Cmo19g01082 404242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01082 261 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 261 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Cmo19g01082 261 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 261 - -
Cmo19g01082 261 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 183 IPR029021 -
Cmo19g01082 261 CDD DSP_plant_IBR5-like 47 176 - -
Cmo19g01082 261 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311|GO:0016791
Cmo19g01082 261 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470|GO:0008138
Cmo19g01082 261 SMART dsp_5 46 179 IPR020422 GO:0006470|GO:0008138
Cmo19g01082 261 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0008138|GO:0016311
Cmo19g01082 261 Gene3D Protein tyrosine phosphatase superfamily 41 188 IPR029021 -
Cmo19g01082 261 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00757 Cmo-Chr18:9203880 Cmo19g01082 Cmo-Chr19:9311595 6.05E-11 dispersed
Cmo19g01082 Cmo-Chr19:9311595 Cmo04g00237 Cmo-Chr4:1182084 3.70E-12 dispersed
Cmo11g02021 Cmo-Chr11:13784088 Cmo19g01082 Cmo-Chr19:9311595 3.13E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01082 K04459 - csv:101211000 478.789