Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01087 ATGGCGGCTAAATCTGTATCTCAAAATCACATAAGAGGCATACTTCTTATGCTCTGTTCAGTTCTTCTGCTGCAGTTTTCTACCTTCGGATTGGCAGCCACGCCCAAGCTTCATCGAGAAGAAGTGAAAGCGTTGAAACAGATCGAGAAGAAGATGGGGAAAAACGACTGGAATTTTAGCCTAGATCCTTGCAGTGGAGAAGGAAATTGGCGCGTAGTTAATGGAAGAAAAGGCTTCGAAAGCTCCGTCACATGTGATTGCTCTTTCAATCACAACTCCTCTTGCCGTATCGTCGCCATAGCTCTGAAGTCACAGAATCTATCTGGCGTTGTGCCACCAGAATTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGAAACTGTCTCACGGGTTCTATTCCGTCACAATGGGCTACCATGCGGTTGGAAGACCTTTCTTTCATGGGAAACAAATTGTCCGGCCCATTCCCGAAAGTTCTTACGAATATCACCACTCTCAGAAATCTGAGCATTGAAGGAAATCTATTTTCCGGCCAAATTCCACCAGGGATCGGAAAACTAGTCAATTTGGAAAAGCTTGTTCTGGCATCAAATGGCTTCACCGGAGAATTGCCAAAAGCACTAGCGAAGTTGTCGAACTTAACTGATATGAGGATTAGTGACAACAACTTTTCTGGAAAGATACCTGAGTTCATTAGTAATTGGACACAGATTGAAAAACTGAGAATATCTGACTTAAAAGGTGGAAGGTCTCTTTTTCCACCGTTGAGCAAAATGGAATCCATGAGGACGCTGATACTGAGGAAGTGCTTCATTGTCGGAGAAATCCCTAAATACATCGGGGACATGAGAAGATTGAAAAACTTAGACCTGAGCTACAATGACTTGATTGGTGAAGTTCCTGCATCGTTGGAACGACTGGAAAAAATAGATTACATATATTTGACAGGAAACAAGCTCAATGGAATTATTCCTGGTTGGGTCTTAGGAAGCAACAAGAATGTGGATCTTTCTAACAACAACTTCACTTGGGAAAACTCAAGCCCAGCTGAGTGTCCTCGTGGGAGTGTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTCCCGTGTTCTGCATCAAAGGAAGAGCAGCACTACTCCTTGCACATTAACTGTGGCGGTAAAGAAGCATTTGTACGGGGTGAAAGGTATGAAGCGGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCACAATTGGGCTTTTAGCAGCACGGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATCGAAACAAATACATCCGCTCTTTCAAATGTCTCTGTGGCCAATTCAGAACTGTACACAAAAGCGAGAAATTCTCCTCAATCTCTTACATACTATGGGCTGTGTCTCATAAATGGGAATTATAGTGTTAAACTCCACTTTGCAGAGATTGTATTTATAAATGATAGTTCATTCAACAGCCTTGGGAGGCGAATATTTGATGTGTACATTCAGGAAAAGCTGGTCCTAAAAGATTTTGATATAGAACATGAAGCAGGGGGTACAGGTAAGCCCATTATAAAAAAATTTACCGCAGTTGTCACAAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACCGGAATCCCACTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAATTTTACACCTCCTAAGAACCATGTGAAGAAGCATCACACCATCATAATTATTGGGACAGCAGCAGCAGCTTTTGTTCTCCTTCTGCTGCTATGTATTATGAGGAGGAACGGATGGCTGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACTATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCAAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAGTTGTCGTCGAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCACTGCAACACCCAAATCTTGTCAAGCTTTATGGATGCTGTGTTGATGGGAACCAACTAATGTTGATTTATGAGTACATGGAAAATAATTGCTTATCACGTGCCCTTTTCAAAAATGACCCACACTCTAAATTGAGATTGGACTGGCCCACTAGGCAGAAAATTTGTCTGGGGATAGCTAGAGGTTTGGCATATCTGCACGAGGAGTCGAGATTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTGTTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGTTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACCAGAATTGCCGGAACCATTGGTTATATGGCACCTGAATACGCCATGCGTGGGTGCTTGACCAGCAAAGCTGATGTTTATAGCTTCGGAGTTGTTGCCTTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACAGGCCTAAAGAGGAATTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAAGGAAGCCTATTGGAGTTGGTGGACCCAGCCTTAGGCTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAACGTGGCTCTCCTCTGCACCAATGCGTCCCCAACTCTACGGCCTCTAATGTCCCAAGTGGTGAGCATGCTCGAAGGTCGAACTCCAGTGCAGGCTCTTCTTTCTGACCCAGGATTTTCAGCTATTAACTCCAAATTGAAGGCTCTCAGAAATCACTTTTGGCAACAATTGAGCCCCACACGTAGTTTATCATTGGACGACTTCCCCAGTGATTCCTTGAGTTCGAATGTGGAACTGGAGGCAGAAGAGAATCGCAATCTTCAATTGCAGTTCACCAGTTCGCTCAGTGCATCACTTGCCATGCTTGGAGCCCCGATCACTCCAGTAATGAACCCTTCTCCCTTGTTTGCTTCTGTTTTGTGCGTGGTTGCATTTTGTCCGAACAATAATGAAGTTCACATTTATAAATCATTACAAGACAACTGGGAAAGAGTACATGTTCTCCAAAAGCATGATCAACTTATCTCAGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGAAATTCATATGTTTGGAACCTTGAAGGATCGGAATGGGTACCAACTCTTGTCATTCTTAGACTAAACCGAGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGGTAGACCTGGCATTGATAAACATGAACTGATCCTCAAACTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGCGTGGACACCAAGGATTCAAGAGCAGGCAAATTTTCAGATTCAAAGTTCGGAGAGTTAATTGTTCAGCTCGATCTTTCATTCTCTTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGACACAATTCGATGATTTACTTCGTTGATGAAGTTGGTCCTTCTCCTCTAGCTCAGAGTGTTGCATTCCGAGATTTGCCTCTTCGTGATATACTATTTGTTTCTGAGAGAATGGTTATAGGTACAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTATAAGATTTCTTGGTGAAAGGAAAACAGCATCAGGTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAATCGAAGCAAGGTGTCGGCAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGCGTCCACGAGAATTGCATAACGAAGGATGCCCCATATCCACTTAATAATTGCTTATTCAGAGAGCCTTTTACAGAGAAGGCCTCTTGTATTGTGCCTCTTAGAGAGCCAGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGGTTTGGATGGAAAAGTGGTCATTTGGGATTTGGAAGGCCAGGCCGATCTATCTCAGTACTTGTGA 4056 42.6 MAAKSVSQNHIRGILLMLCSVLLLQFSTFGLAATPKLHREEVKALKQIEKKMGKNDWNFSLDPCSGEGNWRVVNGRKGFESSVTCDCSFNHNSSCRIVAIALKSQNLSGVVPPEFSKLRFLKQLDLSRNCLTGSIPSQWATMRLEDLSFMGNKLSGPFPKVLTNITTLRNLSIEGNLFSGQIPPGIGKLVNLEKLVLASNGFTGELPKALAKLSNLTDMRISDNNFSGKIPEFISNWTQIEKLRISDLKGGRSLFPPLSKMESMRTLILRKCFIVGEIPKYIGDMRRLKNLDLSYNDLIGEVPASLERLEKIDYIYLTGNKLNGIIPGWVLGSNKNVDLSNNNFTWENSSPAECPRGSVTRIHPCLKRNFPCSASKEEQHYSLHINCGGKEAFVRGERYEADREGASMFYTGHNWAFSSTGSFMDNDVDADNYIETNTSALSNVSVANSELYTKARNSPQSLTYYGLCLINGNYSVKLHFAEIVFINDSSFNSLGRRIFDVYIQEKLVLKDFDIEHEAGGTGKPIIKKFTAVVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKNHVKKHHTIIIIGTAAAAFVLLLLLCIMRRNGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFKNDPHSKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRIAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTRSLSLDDFPSDSLSSNVELEAEENRNLQLQFTSSLSASLAMLGAPITPVMNPSPLFASVLCVVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKGRPGIDKHELILKLLLATTSTDGKCRIFSTFIKGVDTKDSRAGKFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQSVAFRDLPLRDILFVSERMVIGTGFDCNPMAFAADERGIWSFIRFLGERKTASGSKYGSQFSEAFGKLYGQSKQGVGNDSVESSRLRGCVHENCITKDAPYPLNNCLFREPFTEKASCIVPLREPGVSTIKRFSTSGLDGKVVIWDLEGQADLSQYL 1351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9337712 9355067 + CmoCh19G010870.1 Cmo19g01087 404247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01087 1351 SMART WD40_4 1309 1340 IPR001680 GO:0005515
Cmo19g01087 1351 SMART WD40_4 1030 1069 IPR001680 GO:0005515
Cmo19g01087 1351 SMART WD40_4 1074 1125 IPR001680 GO:0005515
Cmo19g01087 1351 SMART WD40_4 1146 1185 IPR001680 GO:0005515
Cmo19g01087 1351 ProSiteProfiles Protein kinase domain profile. 641 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01087 1351 Gene3D Transferase(Phosphotransferase) domain 1 717 921 - -
Cmo19g01087 1351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1037 1071 - -
Cmo19g01087 1351 Gene3D Ribonuclease Inhibitor 165 252 IPR032675 -
Cmo19g01087 1351 ProSitePatterns Protein kinases ATP-binding region signature. 647 669 IPR017441 GO:0005524
Cmo19g01087 1351 Gene3D - 378 569 - -
Cmo19g01087 1351 CDD STKc_IRAK 647 915 - -
Cmo19g01087 1351 Gene3D Ribonuclease Inhibitor 40 164 IPR032675 -
Cmo19g01087 1351 Pfam Malectin domain 382 565 IPR021720 -
Cmo19g01087 1351 SUPERFAMILY L domain-like 78 345 - -
Cmo19g01087 1351 SUPERFAMILY WD40 repeat-like 1012 1344 IPR036322 GO:0005515
Cmo19g01087 1351 Pfam Protein tyrosine and serine/threonine kinase 644 856 IPR001245 GO:0004672|GO:0006468
Cmo19g01087 1351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Cmo19g01087 1351 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 74 961 - -
Cmo19g01087 1351 Gene3D Phosphorylase Kinase; domain 1 612 716 - -
Cmo19g01087 1351 ProSitePatterns Trp-Asp (WD) repeats signature. 1056 1070 IPR019775 -
Cmo19g01087 1351 ProSiteProfiles Trp-Asp (WD) repeats profile. 1037 1078 IPR001680 GO:0005515
Cmo19g01087 1351 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515
Cmo19g01087 1351 Gene3D Ribonuclease Inhibitor 253 353 IPR032675 -
Cmo19g01087 1351 Gene3D - 1109 1349 IPR015943 GO:0005515
Cmo19g01087 1351 Gene3D - 1009 1099 IPR015943 GO:0005515
Cmo19g01087 1351 SMART serkin_6 641 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01087 1351 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 961 - -
Cmo19g01087 1351 SUPERFAMILY Protein kinase-like (PK-like) 626 914 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00654 Cmo-Chr9:3265759 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo09g00655 Cmo-Chr9:3277220 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo13g00605 Cmo-Chr13:6653499 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo18g00246 Cmo-Chr18:1619425 Cmo19g01087 Cmo-Chr19:9337712 9.50E-62 dispersed
Cmo18g00416 Cmo-Chr18:2724288 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo19g01124 Cmo-Chr19:9525448 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo19g01125 Cmo-Chr19:9537638 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo06g00916 Cmo-Chr6:6462257 Cmo19g01087 Cmo-Chr19:9337712 1.19E-12 transposed
Cmo01g01316 Cmo-Chr1:10421966 Cmo19g01087 Cmo-Chr19:9337712 3.30E-109 wgd
Cmo11g02027 Cmo-Chr11:13818251 Cmo19g01087 Cmo-Chr19:9337712 5.13E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75118 PF07714 PK_Tyr_Ser-Thr 1.40E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01087 - - csv:101219400 1742.63