Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g01097 | ATGGTAGCTGGTGGTGCCGGTTGTTCCGGTTTGGTGATTGGGTTTCTGGGATTGCAGGTGGGGAAGTGTATGAGGGATTTGATTTGGAATTCTGCAGAATTGGACTTTTTCTCTGAATACGGAGATGCTAACAGATTCAAAATCCAGGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCCGTTGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATACATGATATTTTTGAACACGTATCTGATGCTGCTCGGATTCTTCGTGAGATAAAGCTACTCAGACTTCTACGACATCCCGATATTGTCGAAATCAAACACATTATGTTACCACCTTCTCGCAGGGGTTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAACGATGATTTAACAAAAGAGCACTATCAATTTTTCCTTTACCAGCTACTCCGTGCACTGAAATATATTCACACAGCAAATGTTTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAGTTTGTGATTTTGGATTGGCTAGAGTTGCTTTCAGCGACACCCCGACAACAATATTTTGGACGGACTATGTTGCTACCAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTGACCGGAAAACCACTTTTTCCTGGTAAAAATATTGTTCACCAACTTGATTTGATGACAGATCTCCTTGGAACGCCTTCGTTAGATACCATTTCTCGGGCAAGTTGCATTTTATTATGTGTAAGAAATGAAAAGGCTAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCACAGAAGTTCCCAAATGTGGATCCTCTAGCCCTGCAATTACTACGACGATTGCTTGCATTTGATCCAAAGGATCGACCTACTGCCGAAGAGGCATTGGCAGATCCTTACTTTACGGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAACCAATCTCTAAGGTGGAGTTTGAGTTCGAGAGGAGGAAGGTCACGAAAGACGACATTCGCGAGCTGATATTCCTCGAGATACTAGAATACCATCCTCAACTGCTGAAAGACTACTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTTGATCAGTTCAAAAGGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGCTTATCCTCTTGAAAGAAAGCATGCATCTCTTCCTAGGTCTTCAGTACAATCAAATACCATTCCTCCTAAGCCAACATCAAATATTGTTTCCTTTAAAGACCGATATGCACCAGCAGGCTCATACAGCAGCCAGAGGATTGCTGCTACTCAAGCCAAGCCTGGAAGAATTTCGGGCCCGGTCATGCCATACGATAGCGGTGGAAGTGTCGTTAAAGATGCTTACGACCCAAGAACGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCCACATATTATTACCAACAATCTTGCGGCCAAAATGAAGGAAGAACAGCATCAGGGGCTGAGCAGGACACTTCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAGTTAGCAGCAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCCTTATGGCGCGAGTAGGCATCCCCAGGGTGGGAAACAATGACCGTGCTGCTGCACGTTTGCAGGTAAATGCTCAATATGATGCTGGAGCCATTGCTGCCACCACCCGAAGAAACGCGGGTGCAGTCGAGTATGGTATGGCAAGAATGTATTAG | 1875 | 43.47 | MVAGGAGCSGLVIGFLGLQVGKCMRDLIWNSAELDFFSEYGDANRFKIQEVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRASCILLCVRNEKARRYLTSMRKKQPIPFSQKFPNVDPLALQLLRRLLAFDPKDRPTAEEALADPYFTGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKRQFAHLEDNGGKSGPAYPLERKHASLPRSSVQSNTIPPKPTSNIVSFKDRYAPAGSYSSQRIAATQAKPGRISGPVMPYDSGGSVVKDAYDPRTLIRSALPSHAIHPTYYYQQSCGQNEGRTASGAEQDTSLQCKQSPQCGMAAKLAADTAATGAFSNPFLMARVGIPRVGNNDRAAARLQVNAQYDAGAIAATTRRNAGAVEYGMARMY | 624 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 9403201 | 9407075 | - | CmoCh19G010970.1 | Cmo19g01097 | 404257 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g01097 | 624 | SUPERFAMILY | Protein kinase-like (PK-like) | 43 | 348 | IPR011009 | - | |
Cmo19g01097 | 624 | ProSitePatterns | Protein kinases ATP-binding region signature. | 52 | 76 | IPR017441 | GO:0005524 | |
Cmo19g01097 | 624 | CDD | STKc_TDY_MAPK | 45 | 389 | - | - | |
Cmo19g01097 | 624 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 30 | 492 | - | - | |
Cmo19g01097 | 624 | ProSiteProfiles | Protein kinase domain profile. | 46 | 344 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo19g01097 | 624 | MobiDBLite | consensus disorder prediction | 440 | 456 | - | - | |
Cmo19g01097 | 624 | SMART | serkin_6 | 46 | 344 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo19g01097 | 624 | MobiDBLite | consensus disorder prediction | 424 | 460 | - | - | |
Cmo19g01097 | 624 | Pfam | Protein kinase domain | 47 | 344 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo19g01097 | 624 | ProSitePatterns | MAP kinase signature. | 81 | 184 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cmo19g01097 | 624 | Gene3D | Transferase(Phosphotransferase) domain 1 | 132 | 367 | - | - | |
Cmo19g01097 | 624 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 30 | 492 | - | - | |
Cmo19g01097 | 624 | Gene3D | Phosphorylase Kinase; domain 1 | 61 | 390 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00050 | Cmo19g01097 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00702 | Cmo-Chr4:3484679 | Cmo19g01097 | Cmo-Chr19:9403201 | 3.51E-96 | dispersed | |
Cmo17g00265 | Cmo-Chr17:1582906 | Cmo19g01097 | Cmo-Chr19:9403201 | 0 | dispersed | |
Cmo18g00049 | Cmo-Chr18:316757 | Cmo19g01097 | Cmo-Chr19:9403201 | 0 | dispersed | |
Cmo11g02039 | Cmo-Chr11:13864858 | Cmo19g01097 | Cmo-Chr19:9403201 | 2.81E-08 | transposed | |
Cmo11g02038 | Cmo-Chr11:13860920 | Cmo19g01097 | Cmo-Chr19:9403201 | 0 | wgd | |
Cmo19g01097 | Cmo-Chr19:9403201 | Cmo02g00040 | Cmo-Chr2:218307 | 0 | wgd | |
Cmo19g01097 | Cmo-Chr19:9403201 | Cmo20g00282 | Cmo-Chr20:1368617 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75119 | PF00069 | Pkinase | 5.50E-66 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g01097 | - | - | csv:101214068 | 1058.9 |