Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01097 ATGGTAGCTGGTGGTGCCGGTTGTTCCGGTTTGGTGATTGGGTTTCTGGGATTGCAGGTGGGGAAGTGTATGAGGGATTTGATTTGGAATTCTGCAGAATTGGACTTTTTCTCTGAATACGGAGATGCTAACAGATTCAAAATCCAGGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCCGTTGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATACATGATATTTTTGAACACGTATCTGATGCTGCTCGGATTCTTCGTGAGATAAAGCTACTCAGACTTCTACGACATCCCGATATTGTCGAAATCAAACACATTATGTTACCACCTTCTCGCAGGGGTTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAACGATGATTTAACAAAAGAGCACTATCAATTTTTCCTTTACCAGCTACTCCGTGCACTGAAATATATTCACACAGCAAATGTTTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAGTTTGTGATTTTGGATTGGCTAGAGTTGCTTTCAGCGACACCCCGACAACAATATTTTGGACGGACTATGTTGCTACCAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTGACCGGAAAACCACTTTTTCCTGGTAAAAATATTGTTCACCAACTTGATTTGATGACAGATCTCCTTGGAACGCCTTCGTTAGATACCATTTCTCGGGCAAGTTGCATTTTATTATGTGTAAGAAATGAAAAGGCTAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCACAGAAGTTCCCAAATGTGGATCCTCTAGCCCTGCAATTACTACGACGATTGCTTGCATTTGATCCAAAGGATCGACCTACTGCCGAAGAGGCATTGGCAGATCCTTACTTTACGGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAACCAATCTCTAAGGTGGAGTTTGAGTTCGAGAGGAGGAAGGTCACGAAAGACGACATTCGCGAGCTGATATTCCTCGAGATACTAGAATACCATCCTCAACTGCTGAAAGACTACTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTTGATCAGTTCAAAAGGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGCTTATCCTCTTGAAAGAAAGCATGCATCTCTTCCTAGGTCTTCAGTACAATCAAATACCATTCCTCCTAAGCCAACATCAAATATTGTTTCCTTTAAAGACCGATATGCACCAGCAGGCTCATACAGCAGCCAGAGGATTGCTGCTACTCAAGCCAAGCCTGGAAGAATTTCGGGCCCGGTCATGCCATACGATAGCGGTGGAAGTGTCGTTAAAGATGCTTACGACCCAAGAACGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCCACATATTATTACCAACAATCTTGCGGCCAAAATGAAGGAAGAACAGCATCAGGGGCTGAGCAGGACACTTCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAGTTAGCAGCAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCCTTATGGCGCGAGTAGGCATCCCCAGGGTGGGAAACAATGACCGTGCTGCTGCACGTTTGCAGGTAAATGCTCAATATGATGCTGGAGCCATTGCTGCCACCACCCGAAGAAACGCGGGTGCAGTCGAGTATGGTATGGCAAGAATGTATTAG 1875 43.47 MVAGGAGCSGLVIGFLGLQVGKCMRDLIWNSAELDFFSEYGDANRFKIQEVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRASCILLCVRNEKARRYLTSMRKKQPIPFSQKFPNVDPLALQLLRRLLAFDPKDRPTAEEALADPYFTGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKRQFAHLEDNGGKSGPAYPLERKHASLPRSSVQSNTIPPKPTSNIVSFKDRYAPAGSYSSQRIAATQAKPGRISGPVMPYDSGGSVVKDAYDPRTLIRSALPSHAIHPTYYYQQSCGQNEGRTASGAEQDTSLQCKQSPQCGMAAKLAADTAATGAFSNPFLMARVGIPRVGNNDRAAARLQVNAQYDAGAIAATTRRNAGAVEYGMARMY 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9403201 9407075 - CmoCh19G010970.1 Cmo19g01097 404257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01097 624 SUPERFAMILY Protein kinase-like (PK-like) 43 348 IPR011009 -
Cmo19g01097 624 ProSitePatterns Protein kinases ATP-binding region signature. 52 76 IPR017441 GO:0005524
Cmo19g01097 624 CDD STKc_TDY_MAPK 45 389 - -
Cmo19g01097 624 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 492 - -
Cmo19g01097 624 ProSiteProfiles Protein kinase domain profile. 46 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01097 624 MobiDBLite consensus disorder prediction 440 456 - -
Cmo19g01097 624 SMART serkin_6 46 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01097 624 MobiDBLite consensus disorder prediction 424 460 - -
Cmo19g01097 624 Pfam Protein kinase domain 47 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01097 624 ProSitePatterns MAP kinase signature. 81 184 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo19g01097 624 Gene3D Transferase(Phosphotransferase) domain 1 132 367 - -
Cmo19g01097 624 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 492 - -
Cmo19g01097 624 Gene3D Phosphorylase Kinase; domain 1 61 390 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00050 Cmo19g01097 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00702 Cmo-Chr4:3484679 Cmo19g01097 Cmo-Chr19:9403201 3.51E-96 dispersed
Cmo17g00265 Cmo-Chr17:1582906 Cmo19g01097 Cmo-Chr19:9403201 0 dispersed
Cmo18g00049 Cmo-Chr18:316757 Cmo19g01097 Cmo-Chr19:9403201 0 dispersed
Cmo11g02039 Cmo-Chr11:13864858 Cmo19g01097 Cmo-Chr19:9403201 2.81E-08 transposed
Cmo11g02038 Cmo-Chr11:13860920 Cmo19g01097 Cmo-Chr19:9403201 0 wgd
Cmo19g01097 Cmo-Chr19:9403201 Cmo02g00040 Cmo-Chr2:218307 0 wgd
Cmo19g01097 Cmo-Chr19:9403201 Cmo20g00282 Cmo-Chr20:1368617 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75119 PF00069 Pkinase 5.50E-66 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01097 - - csv:101214068 1058.9