Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo19g01110 | ATGTCAAATGAAGAAGGCAAGAATCTATACCAGCCGTATGATCCATTCCATTACGACCAGCTGGATATGAACCGTTCGATCTTCCATCAGCAGCACCCGCCGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGACACCTCGTTGGACTACAACAGCCTGTCGAGAGCGTTCGACGTGTCGTGCTCTTCATCTGAAGTCATTTCTCCGGTGGACGACGTGTCGAAAAACAAGGCTTCTTGTGGAGGCAAGAATTTGAACCAATCTTCAACCACCCAGAATTCTTCTGTGTCGTCTTCGTCTAATGAGGCCGTAGTTGAAGAAGATTCAATCAAGAGCATCAAAGAGGACCCAAGAGATGAAGAAAAGTCCAAGAAACAGAACAACATATCAAAAAAGAAAGAGAAGAGGCAGAGGGAGCCACGGTTTGCTTTCTTGACAAAGAGTGAGATAGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAAAAGGCAGTAAAAAACAGTCCTTACCCAAGAAGCTACTACAGATGCACGAGTCAGAAGTGTTTAGTGAAGAAGCGAGTGGAAAGATCATATCAAGATCCTTCTGTGGTGATTACTACATATGAAGGTCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCTGGAATCATGTCGTCTCCGTTTTATGCATCGGCGGCGTCGACGTCGCTCACCGCCCCCTCATCTGGTCCTACGCTTCCTCATGAACTCTTTTCGCATTTGTTACCGACCAACTCCCGAGCTGACCCGGCATCCCTGATGTACCAGAATCTAAGCCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG | 876 | 45.89 | MSNEEGKNLYQPYDPFHYDQLDMNRSIFHQQHPPLDPALMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISPVDDVSKNKASCGGKNLNQSSTTQNSSVSSSSNEAVVEEDSIKSIKEDPRDEEKSKKQNNISKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASAASTSLTAPSSGPTLPHELFSHLLPTNSRADPASLMYQNLSLQMPDHYGLLQDLFTQK | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 9444514 | 9445883 | + | CmoCh19G011100.1 | Cmo19g01110 | 404270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo19g01110 | 291 | PANTHER | WRKY TRANSCRIPTION FACTOR 71-RELATED | 22 | 289 | - | - | |
Cmo19g01110 | 291 | Pfam | WRKY DNA -binding domain | 156 | 212 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g01110 | 291 | Gene3D | WRKY domain | 140 | 216 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g01110 | 291 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 22 | 289 | IPR044810 | GO:0003700 | |
Cmo19g01110 | 291 | ProSiteProfiles | WRKY domain profile. | 150 | 215 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g01110 | 291 | SMART | WRKY_cls | 155 | 214 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo19g01110 | 291 | MobiDBLite | consensus disorder prediction | 109 | 142 | - | - | |
Cmo19g01110 | 291 | MobiDBLite | consensus disorder prediction | 80 | 142 | - | - | |
Cmo19g01110 | 291 | MobiDBLite | consensus disorder prediction | 81 | 108 | - | - | |
Cmo19g01110 | 291 | SUPERFAMILY | WRKY DNA-binding domain | 148 | 215 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01565 | Cmo-Chr6:11028323 | Cmo19g01110 | Cmo-Chr19:9444514 | 4.15E-45 | dispersed | |
Cmo14g01612 | Cmo-Chr14:12805350 | Cmo19g01110 | Cmo-Chr19:9444514 | 3.08E-44 | dispersed | |
Cmo17g00367 | Cmo-Chr17:2255107 | Cmo19g01110 | Cmo-Chr19:9444514 | 8.17E-49 | dispersed | |
Cmo11g02044 | Cmo-Chr11:13877109 | Cmo19g01110 | Cmo-Chr19:9444514 | 2.37E-138 | wgd | |
Cmo19g01110 | Cmo-Chr19:9444514 | Cmo20g00284 | Cmo-Chr20:1380500 | 1.28E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11678 | PF03106 | WRKY | 2.40E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo19g01110 | - | - | csv:101211248 | 422.165 |