Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01110 ATGTCAAATGAAGAAGGCAAGAATCTATACCAGCCGTATGATCCATTCCATTACGACCAGCTGGATATGAACCGTTCGATCTTCCATCAGCAGCACCCGCCGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGACACCTCGTTGGACTACAACAGCCTGTCGAGAGCGTTCGACGTGTCGTGCTCTTCATCTGAAGTCATTTCTCCGGTGGACGACGTGTCGAAAAACAAGGCTTCTTGTGGAGGCAAGAATTTGAACCAATCTTCAACCACCCAGAATTCTTCTGTGTCGTCTTCGTCTAATGAGGCCGTAGTTGAAGAAGATTCAATCAAGAGCATCAAAGAGGACCCAAGAGATGAAGAAAAGTCCAAGAAACAGAACAACATATCAAAAAAGAAAGAGAAGAGGCAGAGGGAGCCACGGTTTGCTTTCTTGACAAAGAGTGAGATAGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAAAAGGCAGTAAAAAACAGTCCTTACCCAAGAAGCTACTACAGATGCACGAGTCAGAAGTGTTTAGTGAAGAAGCGAGTGGAAAGATCATATCAAGATCCTTCTGTGGTGATTACTACATATGAAGGTCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCTGGAATCATGTCGTCTCCGTTTTATGCATCGGCGGCGTCGACGTCGCTCACCGCCCCCTCATCTGGTCCTACGCTTCCTCATGAACTCTTTTCGCATTTGTTACCGACCAACTCCCGAGCTGACCCGGCATCCCTGATGTACCAGAATCTAAGCCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 876 45.89 MSNEEGKNLYQPYDPFHYDQLDMNRSIFHQQHPPLDPALMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISPVDDVSKNKASCGGKNLNQSSTTQNSSVSSSSNEAVVEEDSIKSIKEDPRDEEKSKKQNNISKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASAASTSLTAPSSGPTLPHELFSHLLPTNSRADPASLMYQNLSLQMPDHYGLLQDLFTQK 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9444514 9445883 + CmoCh19G011100.1 Cmo19g01110 404270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01110 291 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 22 289 - -
Cmo19g01110 291 Pfam WRKY DNA -binding domain 156 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g01110 291 Gene3D WRKY domain 140 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo19g01110 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 22 289 IPR044810 GO:0003700
Cmo19g01110 291 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g01110 291 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo19g01110 291 MobiDBLite consensus disorder prediction 109 142 - -
Cmo19g01110 291 MobiDBLite consensus disorder prediction 80 142 - -
Cmo19g01110 291 MobiDBLite consensus disorder prediction 81 108 - -
Cmo19g01110 291 SUPERFAMILY WRKY DNA-binding domain 148 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01565 Cmo-Chr6:11028323 Cmo19g01110 Cmo-Chr19:9444514 4.15E-45 dispersed
Cmo14g01612 Cmo-Chr14:12805350 Cmo19g01110 Cmo-Chr19:9444514 3.08E-44 dispersed
Cmo17g00367 Cmo-Chr17:2255107 Cmo19g01110 Cmo-Chr19:9444514 8.17E-49 dispersed
Cmo11g02044 Cmo-Chr11:13877109 Cmo19g01110 Cmo-Chr19:9444514 2.37E-138 wgd
Cmo19g01110 Cmo-Chr19:9444514 Cmo20g00284 Cmo-Chr20:1380500 1.28E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11678 PF03106 WRKY 2.40E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01110 - - csv:101211248 422.165