Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01111 ATGTCATCTGGAACTACTTTGAATACAGAATTGTCAAAGAAAACGTCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATCTTATCTGTATGGGTGATGTTTCAAAGAAAGACAAGGAGATCCCCAGAAAACTTCTCCACTTCTCAAATACCAAACGTCTCGAAGGATATTAAGGTGGATAGAATCGCGACTCAATCTGCCCACGGCAATCATCTTGAGAACCTTTATCATTCTATTCATGATAAATCAAATGAGAAGAACTCAGAGAAGATGATTGGTCATTTGAGCATGAGCAAGTTGAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTACTATCATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGCCGTACGGAGGATATGGAGGACTTGTGACTGCCTCTCCTCTCGTTGGCTTACCTGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACCCTCAGGGACCTAGAATTTGCGACACATCGTTTCTCTCCAGACAATGTTCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTAAAGAAGCTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAGGTGGAGGCCATTGGTCATGTAAGACACAAGAACCTCGTACGACTCCTCGGCTATTGCATTGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGCGCTATGCGGCAACATGGCACCCTTACATGGGATGCCCGGATGAAGGTGCTTCTTGGCACTGCTAAGGCGCTAGCATATTTACATGAGGCAATTGAACCGAAGGTTGTCCACAGAGACATAAAATCTAGCAACATCTTAATTGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAAAGTCACATCACGACTCGAGTGATGGGCACATTTGGGTATGTGGCGCCGGAATATGCCAACACTGGCTTGTTGAATGAGAAGAGTGACATTTATAGCTTTGGCGTTCTCCTTCTGGAAGCAATTACAGGAAGGGACCCTGTTGATTATGGCCGTCCTGCTAATGAGGTTAACCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCTGAGGAAGTTATAGATCCAAGTCTTGAAACTAAACCTTCTACACGCGCATTGAAACGTGCCCTTCTGATTGCGCTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACTCAAGTTGTTAGAATGCTTGAAGCTGATGACTACCCATCACGCGAGGATCGGAGGAGCCAAAAGAGCAGCACGGCGAACACGGAAATAGAGTCGACGAAAGAGATCTCGAGTCCAGCTGAGGTTGGAAAGAAGCAACTCGAGAGCCGAGCCCAAGGTAGCATCGTCTCCAACTAG 1545 44.34 MSSGTTLNTELSKKTSFLGLSLWVLICLCVGAFIVLILGILSVWVMFQRKTRRSPENFSTSQIPNVSKDIKVDRIATQSAHGNHLENLYHSIHDKSNEKNSEKMIGHLSMSKLSDPDNISQCSSNYYHERVFSSHSGEEGSSGTVRKQSSMPYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATHRFSPDNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWDARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANTEIESTKEISSPAEVGKKQLESRAQGSIVSN 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9447468 9452780 - CmoCh19G011110.1 Cmo19g01111 404271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01111 514 CDD STKc_IRAK 198 464 - -
Cmo19g01111 514 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Cmo19g01111 514 PANTHER OS10G0497600 PROTEIN 2 508 - -
Cmo19g01111 514 Pfam Protein kinase domain 195 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01111 514 MobiDBLite consensus disorder prediction 464 514 - -
Cmo19g01111 514 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01111 514 SMART serkin_6 192 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01111 514 PANTHER OS01G0323000 PROTEIN 2 508 - -
Cmo19g01111 514 Coils Coil 212 232 - -
Cmo19g01111 514 Gene3D Transferase(Phosphotransferase) domain 1 268 482 - -
Cmo19g01111 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Cmo19g01111 514 MobiDBLite consensus disorder prediction 464 480 - -
Cmo19g01111 514 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Cmo19g01111 514 SUPERFAMILY Protein kinase-like (PK-like) 176 469 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01068 Cmo-Chr5:8613152 Cmo19g01111 Cmo-Chr19:9447468 0 dispersed
Cmo14g02120 Cmo-Chr14:15315376 Cmo19g01111 Cmo-Chr19:9447468 1.29E-166 dispersed
Cmo11g02045 Cmo-Chr11:13879578 Cmo19g01111 Cmo-Chr19:9447468 0 wgd
Cmo19g01111 Cmo-Chr19:9447468 Cmo02g00038 Cmo-Chr2:209735 0 wgd
Cmo19g01111 Cmo-Chr19:9447468 Cmo20g00285 Cmo-Chr20:1382946 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75120 PF00069 Pkinase 8.70E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01111 - - csv:101212378 932.554