Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01123 ATGGGGCCAATACAAACATTTAACACGATTTGGGCCATCTCAGTGTACGGAAAAGGCGCGCACGCTGTTCTGGTTACAACAATCCTTATGAATTCTGATATTGGCAGCCGTCGGCATAGAGCGCAAGTGGATAAATGCAGGGCCACCGCCCCCTCGCCGGTGGCTTACCGGACTTCCATGCGACCCAAGAATACTTGTCTACCACTAAAGACAATCAATTTATTAATGGAGAACTTGAATAAGTCTCGATCGTCACCTTGTGGTCTTCTTTTTCAACTGTTGATTGTTATAAACAAAATATCATTTTCTCTATCTAAGGATGCGCTGTGGCTAATTCATATCAATCCTCCCTCCATAATTCTGTCTGTAAGTGATCAAGCTTCCAATTCCATGCCCATGTTCATGGCGTCTTCATCTTCAGGTTTCATCTTTGCTGTTTGTGCTATTGCTTCCATTGTCTGCCACCTGGCTGTTTTGTCTGAAGCTCAAAATTCAACTCAGCCCACCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTAGACAATGGCGTATATCGGCGCCATCAGGGGCGTGGAATATAAGCGGGAATTTGTGCAGTGGGAGGGCAGTCGACACTACCACCCCCGTTGACATTAATGGAAACCTCAATCCTCTTATAAAATGCGATTGCTCAGCCAACAACGGTGCAACTTGCCTCATTACTCAACTGCACGTTTATGCAATAAACGTTGTTGGTGTACTTCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGACTGGAACGCTATCTCCATCTGTTGGTAATCTCACAGAATTGCGGAAGTTGAGCCTGGGCATTAATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTCTCTAAACTGGAACTGTTGGCTTTCGGATCCAACAATTTCTCTGGTCCCTTACCGCCAGAGCTTGGAAATCTTTCTATGTTGAAGGAACTATACATTGATAGCTCTGGAGTTTCTGGTGGTATCCCTCAATCATTTTCACGCCTAAGAAACTTGCATACAGTGTGGGCATCAGACAATGAATTCAGGGGCAGAATACCTGATTTCATCGGGAGTTGGACACGGCTAACGTCTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCCATACCATCGACATTTTCAAACCTGACATCTTTGACGGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTAGCATTCATCAGTAATATGGCATCTCTAACTATCCTGGTGTTGAGAAATAATAATATTACAGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAATTTGAGTTCACTGTCACACTTGTTTCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGCATCACTTCTTAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTCCTTGGATCAACCAGCAAAATTTACAGATAAATTTAGTAGTCAACAATTTCACAATTGAAGGTTCAAGTAGCAGGTATTTCCATGATGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGACCGTCCAAGATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCACAAGTTCATCAGGGATTTTGTTTGAAAGGGAAAATGAGACTCTCGGTCCTGCTACATACTTTGTTACCGAGTCAAATAGATGGGCCGTTAGTAATACTGGATACTTCACTGGGACCAACAATCCTGAATACATAGGCAAGACATTGTCTCAATTCCCAAACTCCCTTGACACAGAACTTTTTCAGACACAGCGTCTATCTGCTTCATCATTGAGATACTATGGACTGGGACTTGAGAATGGAAACTACACAGTGAACCTTCATTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATCCAGGGAAATCGTGTCTTACAGAATTTTGATATCAGAAAGGAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAAGAATTTTACGGCTGAAGTTACAGAAAGCTTCCTGGAAATTCATCTCTTTTGGGCAGGCAAAGGTACTTGCTGCATACCTAATCAGGGTGCTTTTGGACCCTCCGTTTCAGCCATCAGTGCTACCCCAGATTTTGAACCAACTGTCAGCAACGTACCTCCAAATACTGAGGAGAATAATAGAACGGGCCTAATTGTAGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGTGCAGTTTTCTTTGTCATCCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTTGGGATAGATGCTAGACCGTACACTTTTAGTTTTTCTGAACTAAGGGGTGCTACAAGCGACTTTAATCCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACACTATGCGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTCGCTGAGATTGCTACAATATCCGCAGTGCAACATCGTAACCTTGTAAAATTATATGGATGTTGCATTGAGGCCGACAAACGTCTCCTTGTTTATGAGTTTCTAGAAAACAAGAGTCTTGACCAAGCATTATTTGGAAATAAACATTTGACTGTTGATTGGCCAACACGTTTTGACATATGCGTGGGTGTAGCAAGGGGTCTCACTTACCTTCACGAGGAATCAAGACTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGACGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTACGACGACAAAAAGACTCATATAAGCACCCGTGTCGCTGGGACAATTGGTTATCTTGCACCTGAGTACGCCATGCGTGGCCACCTTACGGAAAAGGCTGATGTGTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTCAGTGGAAGGCCAAATTCAGACCCAAGCTTAGAGCAAGACAAAATTTATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATCCTGAATTATCAGAGTTCAGCAAGGAGGAAGTAAAGAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGCTCTTCGGCCATCAATGTCCCGCGTAGTGGCAATGCTGACCGGAGACATCGAAGTGACTCCTGTAACTTCCAAACCAGGTTACCTTACTGATTGGAAATTTGATGACATTACAAGCTTTATAGATAATCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCGACTAGTTCGAGTGTTGTTGGTGCAAAGCATACGCCAGCCAATGATTTTGAACCAATGCTCCATGAATTATTAGGGGAAGGTAGGTGA 3522 43.36 MGPIQTFNTIWAISVYGKGAHAVLVTTILMNSDIGSRRHRAQVDKCRATAPSPVAYRTSMRPKNTCLPLKTINLLMENLNKSRSSPCGLLFQLLIVINKISFSLSKDALWLIHINPPSIILSVSDQASNSMPMFMASSSSGFIFAVCAIASIVCHLAVLSEAQNSTQPTTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPVDINGNLNPLIKCDCSANNGATCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGTLSPSVGNLTELRKLSLGINALSGELPKELGSLSKLELLAFGSNNFSGPLPPELGNLSMLKELYIDSSGVSGGIPQSFSRLRNLHTVWASDNEFRGRIPDFIGSWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISNMASLTILVLRNNNITGSIPSNIGEFRRLTQLDLSFNNLTGEIPSSLFNLSSLSHLFLGNNKLNGTLPTQKSASLLNIDLSYNDLSGSFPPWINQQNLQINLVVNNFTIEGSSSRYFHDGLPSGLNCLQRNFPCNRDRPRYSDFGIKCGGPQITSSSGILFERENETLGPATYFVTESNRWAVSNTGYFTGTNNPEYIGKTLSQFPNSLDTELFQTQRLSASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSRGRRLFDIYIQGNRVLQNFDIRKEAGGSFLAVRKNFTAEVTESFLEIHLFWAGKGTCCIPNQGAFGPSVSAISATPDFEPTVSNVPPNTEENNRTGLIVGLVVGLGSVFFLIIGAVFFVIQRRKRRRAYEDEELLGIDARPYTFSFSELRGATSDFNPSNKLGEGGFGPVYKGTLCDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGNKHLTVDWPTRFDICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKIYLLEWAWYLHENNCELEMVDPELSEFSKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVTPVTSKPGYLTDWKFDDITSFIDNPSTEEPDTGRYASTSSSVVGAKHTPANDFEPMLHELLGEGR 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9513633 9524649 - CmoCh19G011230.1 Cmo19g01123 404283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01123 1173 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 271 1145 - -
Cmo19g01123 1173 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Cmo19g01123 1173 Gene3D Ribonuclease Inhibitor 193 336 IPR032675 -
Cmo19g01123 1173 ProSiteProfiles Protein kinase domain profile. 834 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01123 1173 MobiDBLite consensus disorder prediction 1132 1157 - -
Cmo19g01123 1173 SUPERFAMILY L domain-like 236 531 - -
Cmo19g01123 1173 Gene3D Ribonuclease Inhibitor 337 553 IPR032675 -
Cmo19g01123 1173 Gene3D Transferase(Phosphotransferase) domain 1 910 1110 - -
Cmo19g01123 1173 MobiDBLite consensus disorder prediction 1132 1154 - -
Cmo19g01123 1173 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 271 1145 - -
Cmo19g01123 1173 SMART serkin_6 834 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01123 1173 Gene3D Phosphorylase Kinase; domain 1 796 909 - -
Cmo19g01123 1173 Pfam Protein tyrosine and serine/threonine kinase 837 1101 IPR001245 GO:0004672|GO:0006468
Cmo19g01123 1173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Cmo19g01123 1173 CDD STKc_IRAK 840 1104 - -
Cmo19g01123 1173 Gene3D - 567 754 - -
Cmo19g01123 1173 Pfam Malectin domain 567 750 IPR021720 -
Cmo19g01123 1173 SUPERFAMILY Protein kinase-like (PK-like) 818 1136 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00914 Cmo-Chr6:6442327 Cmo19g01123 Cmo-Chr19:9513633 0 dispersed
Cmo06g00916 Cmo-Chr6:6462257 Cmo19g01123 Cmo-Chr19:9513633 3.21E-71 dispersed
Cmo11g00345 Cmo-Chr11:1693577 Cmo19g01123 Cmo-Chr19:9513633 3.26E-104 dispersed
Cmo19g01123 Cmo-Chr19:9513633 Cmo19g01125 Cmo-Chr19:9537638 0 dispersed
Cmo19g01123 Cmo-Chr19:9513633 Cmo19g01124 Cmo-Chr19:9525448 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75121 PF07714 PK_Tyr_Ser-Thr 2.90E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01123 - - cpep:111811393 2073.9