Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01124 ATGTCCATGACGTCTTCGTCTTCAGGTTTCATCTTCGCTCTTTGTGCTATTGCTTCCATCGTCGGCCACCTGGTTGTTTTGTCTGAAGCTCAAAATTCAACTCAACCCACCACCGATCCTGACCAAGCAAGAGCTCTGAATTCCGTATTTAGTCAATGGCGTATATCGGCGCCATCAGGGGCATGGAATATAAGCGGGAATTTGTGCAGTGGGAGGGCAGTCGACACTACCACCCCCATTGACATTAATGGAAACCTCAATCCTCTTATAAAATGCGATTGCTCAGCCAACAACGGTGCAACTTGCCTCATTACTCAACTGCACGTTTATGCAATAAACGTTGTTGGTGTACTTCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGTTGGATCAAAATTTCTTGACTGGAACGCTATCTGCATCTGTTGGTAATCTCACAGAATTGCGAACGTTGAGCCTGGGCATTAATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTGGAACTGTTATACTTTGATAGCTCTGGAGTTTCTGGTGGTATTCCTCAATCATTTTCACGCCTAAGAAACTTGCGTACAGTATGGGCATCAGACAATGAATTCAGGGGCAGAATACCTGATTTCATCGGGAGTTGGACACAGCTCACAACTTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTAGCATTCATCAGTAATATGACATCTCTAACTATCCTGGTGTTGAGAAATAATAATATGACGGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTACCCAGCTGTTTCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGCATCACTTCTTAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTTCTTGGATCAACCAGCAAAACTTACAGATAAATTTAGTAGCCAACAATTTTAAAATTGAAGGTTCAAGTATCAGCAGTGGTTTGCCTTCTGGATTGCATTGTCTTCAACGCAACTTTCCTTGTAATCGAGACCGTCCAATATATTCTGATTTTGGGATCAAGTGTGGAGGTCCTCAGTTCAGAAGTTCATCAGGGATTTTGTTTGAAGCGGAAAATGAGACTCTTGGTCCAGCTACGTACTTTGTTACTGAGTCAAATAGGTGGGCCGTTAGTAATACGGGATACTTCACTGGGAGCAACAATGTTCAATACATGGCCTCATTGTCTCAATCCCCAAACACCCTTGTGGGAGAACTTTATCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGACTTCAGAATGGCAACTACACTGTGAACCTTTATTTTGCAGAAATAGTTTTTCCAAATTTTAATACATGGCAAAGCCGTGAGAGGCGTCTCTTTGATATATATATACAGGGAAAACGTGTCTTACAGAATTTTGATATTAGAAAGGAGGCAGGTGGGTCTTTCCTTGCTGTCCCAATGAACTTTACGGCTGAAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTAATCAGGGTTCTTATGGACCCTCTGTTTCAGCCATCAATGCTACCCCGGATTTTGAACCATCTGTCAGTAACATACCTCCAAGTACTGAGGAGAATAATAAAACGGGCCAAATTGTAGGGAGGGATAATAGAACGGGCCTAATTGTAGGACTCGTTGTTGGGTTAGGATCTGTTTTCTTTCTCGTTTTTGGCGCAGTTTTCCTTGTCGTCCGGAGAAGGAAAAGGCGTCTTGCCTATGAAGATGAAGAGCTCCTGGGGATAGATGCTAGACCGTACACTTTTAGTTTTTCTGAACTAAGGGTTGCTACAAGCGACTTCAATTCATCCAACAAACTTGGTGAGGGAGGATTTGGACCTGTTTACAAGGGAACACTATGCGATGGAAGAATGGTTGCTGTGAAGCAACTCTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAGCATCGCAATCTTGTAAAACTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGAAAAAAACATTTGATTATTGATTGGGCAAAACGTTTTGAGATATGCGTGGGTGTAGCAAGGGGTCTCACTTACCTTCATGAGGAATCAAGACTTCGCATAGTGCACAGAGACGTTAAGGCCAGTAACATCCTGCTTGATGGTAATCTGATTCCTAAAATTTCAGATTTTGGCTTAGCCAAACTTTACGACGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCGCCTTACGGAGAAAGCTGATGTCTTTGGATTTGGCGTTATGGCTCTTGAAATTGTCAGTGGAAGACCGAATTCAGACCCAAGCTTAGAGGAAGACAAAATTTATCTTCTGGAATGGGCATGGTACCTCCACGAAAACAACCGTGAACTTGAGATGGTGGATTCTGAACTATCAGAGTTCAGCAGGGAGGAAGTAAAAAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCCGCTCTTCGGCCATCGATGTCCCGCGTAGTAGCAATGCTGACTGGAGATGTTGAAGTGGCCGCTGTGACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTCATTGATAACGCATCAACTGAAGAACTTGATACTAGCCGCTATGCATCAACAAGTTCTAATGTTGTTGATACAAAGCATTCGCCAGCCAAACCACTGCTCCATGAATCATTTGGGGCCGGGTAG 2916 43.11 MSMTSSSSGFIFALCAIASIVGHLVVLSEAQNSTQPTTDPDQARALNSVFSQWRISAPSGAWNISGNLCSGRAVDTTTPIDINGNLNPLIKCDCSANNGATCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGTLSASVGNLTELRTLSLGINALSGELPKELGSLSKLELLYFDSSGVSGGIPQSFSRLRNLRTVWASDNEFRGRIPDFIGSWTQLTTLRIGDLSNGSSSLAFISNMTSLTILVLRNNNMTGSIPSNIGEFRRLTQLFLGNNKLNGTLPTQKSASLLNIDLSYNDLSGSFPSWINQQNLQINLVANNFKIEGSSISSGLPSGLHCLQRNFPCNRDRPIYSDFGIKCGGPQFRSSSGILFEAENETLGPATYFVTESNRWAVSNTGYFTGSNNVQYMASLSQSPNTLVGELYQTQRLSASSLRYYGLGLQNGNYTVNLYFAEIVFPNFNTWQSRERRLFDIYIQGKRVLQNFDIRKEAGGSFLAVPMNFTAEVTENFLEIHLFWAGKGTCCIPNQGSYGPSVSAINATPDFEPSVSNIPPSTEENNKTGQIVGRDNRTGLIVGLVVGLGSVFFLVFGAVFLVVRRRKRRLAYEDEELLGIDARPYTFSFSELRVATSDFNSSNKLGEGGFGPVYKGTLCDGRMVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGKKHLIIDWAKRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGRLTEKADVFGFGVMALEIVSGRPNSDPSLEEDKIYLLEWAWYLHENNRELEMVDSELSEFSREEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDVEVAAVTSKPGYLTDWKFDDITSFIDNASTEELDTSRYASTSSNVVDTKHSPAKPLLHESFGAG 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9525448 9536368 - CmoCh19G011240.1 Cmo19g01124 404284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01124 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 229 275 - -
Cmo19g01124 971 Coils Coil 854 874 - -
Cmo19g01124 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 272 956 - -
Cmo19g01124 971 SUPERFAMILY L domain-like 81 330 - -
Cmo19g01124 971 Gene3D - 360 546 - -
Cmo19g01124 971 Gene3D Ribonuclease Inhibitor 62 214 IPR032675 -
Cmo19g01124 971 Gene3D Ribonuclease Inhibitor 215 327 IPR032675 -
Cmo19g01124 971 SUPERFAMILY Protein kinase-like (PK-like) 620 937 IPR011009 -
Cmo19g01124 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 88 226 - -
Cmo19g01124 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 272 956 - -
Cmo19g01124 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 229 275 - -
Cmo19g01124 971 Gene3D Phosphorylase Kinase; domain 1 599 711 - -
Cmo19g01124 971 CDD STKc_IRAK 642 906 - -
Cmo19g01124 971 Gene3D Transferase(Phosphotransferase) domain 1 712 915 - -
Cmo19g01124 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Cmo19g01124 971 Pfam Protein tyrosine and serine/threonine kinase 639 903 IPR001245 GO:0004672|GO:0006468
Cmo19g01124 971 SMART serkin_6 636 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01124 971 ProSiteProfiles Protein kinase domain profile. 636 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo19g01124 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 88 226 - -
Cmo19g01124 971 Pfam Malectin domain 360 542 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g01124 Cmo-Chr19:9525448 Cmo19g01087 Cmo-Chr19:9337712 0 dispersed
Cmo19g01123 Cmo-Chr19:9513633 Cmo19g01124 Cmo-Chr19:9525448 0 tandem
Cmo19g01124 Cmo-Chr19:9525448 Cmo19g01125 Cmo-Chr19:9537638 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75122 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01124 - - cpep:111811393 1624.76