Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g01150 ATGTTCCATCCTAATAAGAAAGCTTCGAGTATGAATTCCCACGAGAGATCAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGCTGGACTGTCGAGCTTCACGAGCGCTTTGTGGATGCTGTCACCCAGCTCGGCGGCCCTGATAAGGCCACCCCCAAGACCATCATGCGAGTTATGGGTGTCAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATCAAGGATGGTATGAGAGCTTCCGGATTAGAATTTCATCGAAACACTGCTTCTTCATCCAACATCATCAACCGCACCATGAATGAGATGCAAATGGAGGTCCAGAGAAGATTGCATGAACAACTTGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAATATATTAGAAAAGGCTTGTCAAACCCTTGCGGGTGAGAACATGGCAGTTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCTAATAATAATAATCAGCAAGGCGGAGGTGGCGGTGGCATTGGCGACATGGCTGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTCCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGAGACCGCCAACGCCGACAACGAACTACGGTGGCAGCTCGGGAAAAGGTGCGTTGGACTGGCCGGATGATCTCCGGCTGCAAGATATAGGGATGGCGCCGCCGTCGTCGTGCGTGGTGGAGCAAGAAGATGATTTCAAAGGCATGGATGGGACGCTGGTGGAAAGAGATCAATTGGAGGAAATGTATGATGCAAAGTCAGTGGTGGCAGATGAAGGCATAGGGGGGGATCACAAGAACAACAACAATAATAATAATAATAATAACAATAATAATAATGCGTCCCTAAAGCTTCAGAGGCCATCCCCCCGAAGGGCAGCCCTGGCCGTGGGTAGAGCCAACCACCCTCTTACCACCGCTCCTCTCACCACAAATTCACCCTTCGGTTAA 1140 51.32 MFHPNKKASSMNSHERSGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLEFHRNTASSSNIINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQNILEKACQTLAGENMAVSGGYKAMGGIPNNNNQQGGGGGGIGDMAGGIKDFGSPLGFPSFQDLNLYGGDQLDLDGFMPHNDSLLCLGKKKPRPPTPTTNYGGSSGKGALDWPDDLRLQDIGMAPPSSCVVEQEDDFKGMDGTLVERDQLEEMYDAKSVVADEGIGGDHKNNNNNNNNNNNNNNASLKLQRPSPRRAALAVGRANHPLTTAPLTTNSPFG 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9659420 9662090 + CmoCh19G011500.1 Cmo19g01150 404310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g01150 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 281 IPR044848 GO:0003700
Cmo19g01150 379 MobiDBLite consensus disorder prediction 327 349 - -
Cmo19g01150 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 281 - -
Cmo19g01150 379 MobiDBLite consensus disorder prediction 245 268 - -
Cmo19g01150 379 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Cmo19g01150 379 MobiDBLite consensus disorder prediction 1 19 - -
Cmo19g01150 379 MobiDBLite consensus disorder prediction 322 357 - -
Cmo19g01150 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677
Cmo19g01150 379 Gene3D - 33 91 - -
Cmo19g01150 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Cmo19g01150 379 MobiDBLite consensus disorder prediction 1 27 - -
Cmo19g01150 379 Pfam MYB-CC type transfactor, LHEQLE motif 129 169 IPR025756 -
Cmo19g01150 379 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01253 Cmo-Chr6:9468323 Cmo19g01150 Cmo-Chr19:9659420 3.00E-69 dispersed
Cmo14g01946 Cmo-Chr14:14393688 Cmo19g01150 Cmo-Chr19:9659420 5.03E-68 dispersed
Cmo10g01273 Cmo-Chr10:13133524 Cmo19g01150 Cmo-Chr19:9659420 0 transposed
Cmo19g01150 Cmo-Chr19:9659420 Cmo20g00312 Cmo-Chr20:1530207 1.20E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11681 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g01150 - - cpep:111811117 696.812