Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00011 ATGGCGACGAGCTTCGTCCACTCTCACAGACCCGAGTTTCTCACCGTCGCCGTCGCTGCGGTTGCCATCGGCGTTGCTACTGCCTACTATTTCTATATCACCAAGAAATCTAAACCCCAAGGTTGCTTGGACCCTGATAACTTCAAAGAATTTAAGCTAGTTAAACGCAAACAGCTTAGCCATAATGTAGCGAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGAGGAAAAGATAGCGAAGGTGAAGAAGTTGTGAAACCGTACACTCCAACCAGTTTGGATACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTTCTTGGCGGTGAAAGGTCCTAAGGGACGTTTCAAGTATGAAGCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCGATGTTCCAGATCCCATCAGCATTTCTGAACGTTTCTTTTTTGTGTTTTGAGGTTGCACGAGCAATACTAGAAAACCCAGTTGATCACACCAATGTGCATCTTATATACGCTAATGCTACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGTCTAGGTTCCCCTCCCGCTTTTCTGTCTACTATGTGCTCGATCAGCCTCCTGAAGGATGGGATGGCGGCGTTGGCTTTGTGACTGAGGAAATGATACGACTACACTGTCCTGGACCATCCCCAAATGTTCGGGTGGATATTGAGGTGCGGACCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAAAACTATTGGCTATACTTCCCAAATGCAGTTCCAGTTCTAATCCAACCAACCCCATTATTTACTCTCCTCTTTGCTTTACTTGCCCGATCTAATTCAATCTTCCCATCCCCATCCCAAAAGCAATTGAAGTAA 987 46.1 MATSFVHSHRPEFLTVAVAAVAIGVATAYYFYITKKSKPQGCLDPDNFKEFKLVKRKQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSEGEEVVKPYTPTSLDTDVGYFDLVIKMYPQGRMSHHFREMREGDFLAVKGPKGRFKYEANEVEAFGMLAGGTGITPMFQIPSAFLNVSFLCFEVARAILENPVDHTNVHLIYANATYEDILLKEELDSLASRFPSRFSVYYVLDQPPEGWDGGVGFVTEEMIRLHCPGPSPNVRVDIEVRTTPHEQSYGCLPQNYWLYFPNAVPVLIQPTPLFTLLFALLARSNSIFPSPSQKQLK 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 114784 118973 + CmoCh20G000110.1 Cmo20g00011 404328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00011 328 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Cmo20g00011 328 Gene3D Translation factors 41 141 - -
Cmo20g00011 328 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cmo20g00011 328 Pfam Oxidoreductase NAD-binding domain 159 260 IPR001433 GO:0016491
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 184 267 IPR001834 GO:0016491
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 178 IPR001834 GO:0016491
Cmo20g00011 328 CDD cyt_b5_reduct_like 51 267 - -
Cmo20g00011 328 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Cmo20g00011 328 Gene3D - 142 269 IPR039261 -
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 184 267 - -
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 178 - -
Cmo20g00011 328 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 266 IPR039261 -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 77 88 - -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 158 177 - -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 135 149 - -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 99 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00047 Cmo-Chr6:299972 Cmo20g00011 Cmo-Chr20:114784 9.10E-120 dispersed
Cmo12g01247 Cmo-Chr12:11056880 Cmo20g00011 Cmo-Chr20:114784 1.33E-51 dispersed
Cmo20g00011 Cmo-Chr20:114784 Cmo09g00648 Cmo-Chr9:3235211 1.38E-38 dispersed
Cmo20g00011 Cmo-Chr20:114784 Cmo07g01169 Cmo-Chr7:6270399 9.60E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00011 K00326 - csv:101219272 439.499