Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00011 ATGGCGACGAGCTTCGTCCACTCTCACAGACCCGAGTTTCTCACCGTCGCCGTCGCTGCGGTTGCCATCGGCGTTGCTACTGCCTACTATTTCTATATCACCAAGAAATCTAAACCCCAAGGTTGCTTGGACCCTGATAACTTCAAAGAATTTAAGCTAGTTAAACGCAAACAGCTTAGCCATAATGTAGCGAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGTTGCAGAGGAAAAGATAGCGAAGGTGAAGAAGTTGTGAAACCGTACACTCCAACCAGTTTGGATACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTTCTTGGCGGTGAAAGGTCCTAAGGGACGTTTCAAGTATGAAGCTAATGAAGTTGAGGCCTTTGGGATGCTTGCTGGAGGCACAGGCATAACTCCGATGTTCCAGATCCCATCAGCATTTCTGAACGTTTCTTTTTTGTGTTTTGAGGTTGCACGAGCAATACTAGAAAACCCAGTTGATCACACCAATGTGCATCTTATATACGCTAATGCTACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGTCTAGGTTCCCCTCCCGCTTTTCTGTCTACTATGTGCTCGATCAGCCTCCTGAAGGATGGGATGGCGGCGTTGGCTTTGTGACTGAGGAAATGATACGACTACACTGTCCTGGACCATCCCCAAATGTTCGGGTGGATATTGAGGTGCGGACCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAAAACTATTGGCTATACTTCCCAAATGCAGTTCCAGTTCTAATCCAACCAACCCCATTATTTACTCTCCTCTTTGCTTTACTTGCCCGATCTAATTCAATCTTCCCATCCCCATCCCAAAAGCAATTGAAGTAA 987 46.1 MATSFVHSHRPEFLTVAVAAVAIGVATAYYFYITKKSKPQGCLDPDNFKEFKLVKRKQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSEGEEVVKPYTPTSLDTDVGYFDLVIKMYPQGRMSHHFREMREGDFLAVKGPKGRFKYEANEVEAFGMLAGGTGITPMFQIPSAFLNVSFLCFEVARAILENPVDHTNVHLIYANATYEDILLKEELDSLASRFPSRFSVYYVLDQPPEGWDGGVGFVTEEMIRLHCPGPSPNVRVDIEVRTTPHEQSYGCLPQNYWLYFPNAVPVLIQPTPLFTLLFALLARSNSIFPSPSQKQLK 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 114784 118973 + CmoCh20G000110.1 Cmo20g00011 404328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00011 328 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Cmo20g00011 328 Gene3D Translation factors 41 141 - -
Cmo20g00011 328 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cmo20g00011 328 Pfam Oxidoreductase NAD-binding domain 159 260 IPR001433 GO:0016491
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 184 267 IPR001834 GO:0016491
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 178 IPR001834 GO:0016491
Cmo20g00011 328 CDD cyt_b5_reduct_like 51 267 - -
Cmo20g00011 328 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Cmo20g00011 328 Gene3D - 142 269 IPR039261 -
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 184 267 - -
Cmo20g00011 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 178 - -
Cmo20g00011 328 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 266 IPR039261 -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 77 88 - -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 158 177 - -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 135 149 - -
Cmo20g00011 328 PRINTS Cytochrome B5 reductase signature 99 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00011 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 439.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00047 Cmo-Chr6:299972 Cmo20g00011 Cmo-Chr20:114784 9.10E-120 dispersed
Cmo12g01247 Cmo-Chr12:11056880 Cmo20g00011 Cmo-Chr20:114784 1.33E-51 dispersed
Cmo20g00011 Cmo-Chr20:114784 Cmo09g00648 Cmo-Chr9:3235211 1.38E-38 dispersed
Cmo20g00011 Cmo-Chr20:114784 Cmo07g01169 Cmo-Chr7:6270399 9.60E-132 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00011 Cmo_Chr20 FPKM 2.656383 4.473958 0.301589 0.576281 0.802976 1.081265 0.698209 0.0 2.80526 3.069805