Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00018 ATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGCCCCCTTCGTGGGGATCTAGAAGTGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAAAAAATACGGATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATTCGAGAAATCAAAATTCTGAAGAAACTCCATCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATCTTATCTGGATCTGCAGATGGTAACAAGTACAAAGGTGGTATCTACATGGTTTTCGAGTACATGGATCATGATTTGACAGGTCTTGCTGATCGTCCGGGGATGAGATTTTCAGTTCCCCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAACGATCACAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATATTTGCAGAGCTTCTGCATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCAGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCTTGGTACAACAATTTTAAGCCCACAAGACCAATGAAGAGACGTATTAGAGAAGTTTTCAGGCACTTTGATCGTCATGCTTTAGAACTGTTAGAGAAGATGATTACTCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTGGATGCGGAGTACTTTTGGACGGATCCATTACCCTGTGACCCCAAGAGTTTGCCAAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGGCAACAGCAACGACAACATGAAGAAAATGCAAAGCGACAGAAGTTGCAACACCCACAGCATGCACGCCTTCCACCTATTCAGCAGTCTGGGCAAGCACATGCACACATGCGACCGGTACCCAACCAACCAATTCATGGGTCTCAACCACCAGTTGCTGCAGGACCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCTGGTGGAAATCCCCCTTCTGGATACAACCATTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACAATCAATATGCTCAAGGACGAGGCGCTGCACCCTATGGGTCCGGTAACATGTCAGGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGCAGTAGTTATGGCATGGGAGCTCCAAATTACCCACAGAATGGTCCATATCCTGGTAGTTCTGGCACTGGCCGTGGCTCCAATGTGATGGGTGGAAACCGGAACCAACAATACGGGTGGCAACAGTAA 1566 46.36 MAVTAPGQLNVNEPPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGILSGSADGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMITLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQHARLPPIQQSGQAHAHMRPVPNQPIHGSQPPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGQGGYGNNQYAQGRGAAPYGSGNMSGAGPRGGAGGGSSYGMGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQ 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 154242 160295 + CmoCh20G000180.1 Cmo20g00018 404335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00018 521 SUPERFAMILY Protein kinase-like (PK-like) 19 339 IPR011009 -
Cmo20g00018 521 Gene3D Phosphorylase Kinase; domain 1 14 128 - -
Cmo20g00018 521 CDD STKc_CDK9_like 25 331 - -
Cmo20g00018 521 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cmo20g00018 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cmo20g00018 521 MobiDBLite consensus disorder prediction 342 521 - -
Cmo20g00018 521 MobiDBLite consensus disorder prediction 493 521 - -
Cmo20g00018 521 MobiDBLite consensus disorder prediction 435 453 - -
Cmo20g00018 521 MobiDBLite consensus disorder prediction 344 373 - -
Cmo20g00018 521 Pfam Protein kinase domain 25 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00018 521 ProSiteProfiles Protein kinase domain profile. 25 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00018 521 PANTHER CELL DIVISION PROTEIN KINASE 6 456 - -
Cmo20g00018 521 PANTHER CYCLIN-DEPENDENT KINASE C-2 6 456 - -
Cmo20g00018 521 Gene3D Transferase(Phosphotransferase) domain 1 129 371 - -
Cmo20g00018 521 SMART serkin_6 25 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01916 Cmo-Chr4:9768765 Cmo20g00018 Cmo-Chr20:154242 1.09E-85 dispersed
Cmo18g00702 Cmo-Chr18:8870450 Cmo20g00018 Cmo-Chr20:154242 6.74E-92 dispersed
Cmo18g00940 Cmo-Chr18:10556806 Cmo20g00018 Cmo-Chr20:154242 8.51E-86 dispersed
Cmo20g00018 Cmo-Chr20:154242 Cmo01g00886 Cmo-Chr1:4835903 3.19E-120 dispersed
Cmo20g00018 Cmo-Chr20:154242 Cmo04g02652 Cmo-Chr4:19276697 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75124 PF00069 Pkinase 4.20E-74 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00018 K08819 - csv:101220936 962.6