Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00049 ATGGCATCTTTTAAAGCTTCCATGCCTTTGTTATTTGTTGTGTGTTTGATGGTTGGGTCTGTGAGCGCACAACTGAGCTCCACATTCTACGATACCACATGTCCCAATGTATCAAGCATTGTGCGTGGTGTTGTGGAGCAAGCACTCCGAAGTGACGACAGGGCTGGTGCCAAACTCATCCGTCTCCACTTCCACGACTGCTTCGTCGATGGATGTGATGCGTCGGTGCTATTAGAGGATCAAGATGGCATAGTGAGCGAGCTGGGTGCAAACGGAAACGCTGGCATCACAGGTTTCAATATTGTTAATGACATCAAAGCTGCAATCGAGAATGTTTGTCCGGGTGTCGTCTCTTGTGCTGATATACTAGCCCTTGCTTCTCGACACTCCGTCAACTTGGCAGGAGGCCCGGGTTGGGAGGTTCAATTAGGAAGAAGAGATGGAAGAACAGCAAATTTGGATGGTGCCATGGAGCTTCCAAGTCCTTTTGACGATCTCTCAGTCCTTAGAAGAAAGTTCAGGGACGTTCAACTTGACGATACTACCGATCTCGTTGCTCTATCAGGTGCACACACATTTGGGCGATCGAGATGCCGATTTTTCGACAGACGGCTAAACACTTCAAACCCGGACCCGACCCTGAACTCAACATACGCGGACGAGCTGCGTCAAAACTGTCAACCAGGGCGAGACACATTCGTGAATCTGGACCCAACCACACCGGACACCTTCGACAGCAACTACTTCACAAATCTTCAGAGCAATCGCGGGCTTCTGGAAAGTGATCAAGTTCTGTTCTCCACCAGCGGAGCTCCAACTATCAGTATTGTCAACAGCTTCGCCAGCAGCCAGAGCCAATTCTTCACCGCCTTCGCTCAGTCAATGATTAACATGGGAAATCTCGGGCCTTTGACTGGGAGCACAGGAGAAATCAGGACCAATTGCAGAAGACTCAACTAA 960 49.58 MASFKASMPLLFVVCLMVGSVSAQLSSTFYDTTCPNVSSIVRGVVEQALRSDDRAGAKLIRLHFHDCFVDGCDASVLLEDQDGIVSELGANGNAGITGFNIVNDIKAAIENVCPGVVSCADILALASRHSVNLAGGPGWEVQLGRRDGRTANLDGAMELPSPFDDLSVLRRKFRDVQLDDTTDLVALSGAHTFGRSRCRFFDRRLNTSNPDPTLNSTYADELRQNCQPGRDTFVNLDPTTPDTFDSNYFTNLQSNRGLLESDQVLFSTSGAPTISIVNSFASSQSQFFTAFAQSMINMGNLGPLTGSTGEIRTNCRRLN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 291502 293248 - CmoCh20G000490.1 Cmo20g00049 404366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00049 319 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PANTHER PEROXIDASE 58 13 319 - -
Cmo20g00049 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cmo20g00049 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cmo20g00049 319 Gene3D Peroxidase, domain 2 160 298 - -
Cmo20g00049 319 Pfam Peroxidase 41 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 PANTHER PEROXIDASE 72-RELATED 13 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00049 319 CDD secretory_peroxidase 24 317 IPR033905 GO:0004601|GO:0042744
Cmo20g00049 319 Gene3D - 29 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00049 Cmo-Chr20:291502 Cmo20g00052 Cmo-Chr20:299374 8.71E-139 dispersed
Cmo20g00049 Cmo-Chr20:291502 Cmo20g00050 Cmo-Chr20:294690 1.59E-161 tandem
Cmo15g01429 Cmo-Chr15:9709780 Cmo20g00049 Cmo-Chr20:291502 8.58E-74 transposed
Cmo15g01428 Cmo-Chr15:9709194 Cmo20g00049 Cmo-Chr20:291502 8.69E-47 transposed
Cmo02g01248 Cmo-Chr2:7489384 Cmo20g00049 Cmo-Chr20:291502 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00049 K00430 - csv:101212957 448.743