Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00050 ATGGTTTCCTTCAAAGTTGCTTTCCTTTTGTTTGTGGGGTTCATGGTCGGAGCTTCTAAAGCTCAGCTGTGCCCGACGTTCTATGACGACTCATGCCCCGACGTATCAGACATTGTGCGCGGTGTAGTGCAGCAGGCTTTGGAGACCGACGACCGAGCGGGTGCCAGACTCATTCGCCTTCACTTCCATGACTGTTTCGTTGATGGGTGTGATGGATCAGTTTTACTAGTGAACCAAACGGGAGTAGTGAGTGAGCTTGGCGCTCCTGGAAATGCAAATATTACAGGATTTAACATTGTTGATGACATCAAAGCTGCCCTCGAGGAGGCTTGTCCGGGTGTTGTTTCTTGTGCCGACATCTTAGCCTTAGCTTCCGTACATGCGGTTTCTTTGGTGGGAGGTCCCTTTTGGGAGGTTCAACTGGGAAGAAGAGACAGGCGAAGGGCCAACTTACAAGGCGCAATCAACGGGCTTCCAAGTCCCTTCGAAAATGTTCAAGAACTTAAAGAAAAGTTCGGCAGAGTGGGTCTTGATTCTACTGATCTTGTTGCTCTATCTGGGGCCCACACATTCGGGCGTTCGAGATGCCGATTCTTCGACAGACGTTTGAACGTTTCGAGCCCAGACAACACCCTGGACGCCTCATATGCAACCCAGCTCCGTCAAGCTTGCGCTAGCAGCAGAGACACGTTCTTGAACCTCGACCCCACCACTCCCGACGACTTCGACAACAACTACTACACCAACCTTCAGTCCAACTTCGGCCTTCTCGGCAGCGACCAGGTCCTGTTCTCCACTCCCGGCGAGGACACCGTGGACATCGTCAACATGTTCGCCGGCAGCGAGCAGCAGTTCTTCGACAGCTTCGGGCAGTCCATGATCAACATGGGAAATATCAGCCCTTTAACTGGTGACCAGGGAGAAGTTAGGTGCAACTGCAGAAGACTCAACTGA 954 52.1 MVSFKVAFLLFVGFMVGASKAQLCPTFYDDSCPDVSDIVRGVVQQALETDDRAGARLIRLHFHDCFVDGCDGSVLLVNQTGVVSELGAPGNANITGFNIVDDIKAALEEACPGVVSCADILALASVHAVSLVGGPFWEVQLGRRDRRRANLQGAINGLPSPFENVQELKEKFGRVGLDSTDLVALSGAHTFGRSRCRFFDRRLNVSSPDNTLDASYATQLRQACASSRDTFLNLDPTTPDDFDNNYYTNLQSNFGLLGSDQVLFSTPGEDTVDIVNMFAGSEQQFFDSFGQSMINMGNISPLTGDQGEVRCNCRRLN 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 294690 297006 - CmoCh20G000500.1 Cmo20g00050 404367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00050 317 SUPERFAMILY Heme-dependent peroxidases 22 317 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 Pfam Peroxidase 39 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 Gene3D Peroxidase, domain 2 159 296 - -
Cmo20g00050 317 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 CDD secretory_peroxidase 22 315 IPR033905 GO:0004601|GO:0042744
Cmo20g00050 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Cmo20g00050 317 PANTHER PEROXIDASE 72-RELATED 10 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
Cmo20g00050 317 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00050 317 PANTHER PEROXIDASE 58 10 317 - -
Cmo20g00050 317 Gene3D - 27 317 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01251 Cmo20g00050 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01248 Cmo-Chr2:7489384 Cmo20g00050 Cmo-Chr20:294690 3.62E-162 dispersed
Cmo02g01249 Cmo-Chr2:7491337 Cmo20g00050 Cmo-Chr20:294690 9.61E-78 dispersed
Cmo20g00050 Cmo-Chr20:294690 Cmo20g00052 Cmo-Chr20:299374 3.87E-134 dispersed
Cmo20g00049 Cmo-Chr20:291502 Cmo20g00050 Cmo-Chr20:294690 1.59E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00050 K00430 - csv:101212717 518.464