Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00052 ATGGCCTCCTCCAATGCCATACCCATCTTTTTCTTGTTGGCTCTTCTCTTCGGAGCCTCCTCCGCTCAACTCTCCGAAACCTTTTACGACCGAACTTGCCCTCGCCTCCCCAACATTGTCCGCGCCGCCGTCAAGAAAGCAATCGAAACCGACATCCGTGCCGGTGCAAAGCTCATCCGCCTCCATTTCCACGATTGCTTCGTCAATGGCTGTGATGGCTCTGTTTTGCTAGAGGATGCTCCCGGCATAGTCAGTGAGCTGAACTCCCCCGGAAATCAGGGAATTCAAGGACTCGAGATTGTCGACGCCATTAAAGCCGCCGTGGAGAGTGAATGCCCCAATACCGTTTCCTGTGCCGACATCCTAGCTCAGGCTTCTAAGGATTCTGTCGATGTGCAAGGAGGGCCTAGTTGGAGAGTGTTATACGGAAGACGAGACAGTAGAATAGCGAACAAAACAGGGGCCGATAGTGGCCTGGCCAGTCCCTTCGAAACTCTCGCTGAACTCAAAAAGAAATTTTGTGATGTTGGCCTCGGAACCACTGATCTCGTGGCTTTATCTGGAGCGCATACGTTTGGTCGATCGAGATGCAGATTCTTCAGCCACCGATTTGCCAATTTCAACAATACCGGAAGGCCAGATCCATCACTGGACGCTAACTACAGAGGATTCCTTCAAGGGGTTTGTTCTGCAGGTCCAGACACAAGAGCAAATTTCGACCCGACAACACCGGACGTGTTCGACAAAAACTACTACACCAACCTTCAAGCAGGGAAGGGGCTTCTGCAGAGCGATCAAGAGCTGTTCTCCACTGCTGGGGCGGACACCATCGCCATTGTGAACAGCTTCGCGGCCAGAGAAGGCACCTTCTTCAAGGAGTTCCGGCAGTCCATGATCAACATGGGCAACATCAAGCCTTTGACTGGCAGCCGTGGGGAAATCAGAAAAAACTGCAGGAGGGTCAACTCCGCCACGGGTGGAGAAGGCCACGATGTTATGTAA 1002 52.59 MASSNAIPIFFLLALLFGASSAQLSETFYDRTCPRLPNIVRAAVKKAIETDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEIVDAIKAAVESECPNTVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADSGLASPFETLAELKKKFCDVGLGTTDLVALSGAHTFGRSRCRFFSHRFANFNNTGRPDPSLDANYRGFLQGVCSAGPDTRANFDPTTPDVFDKNYYTNLQAGKGLLQSDQELFSTAGADTIAIVNSFAAREGTFFKEFRQSMINMGNIKPLTGSRGEIRKNCRRVNSATGGEGHDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 299374 301022 - CmoCh20G000520.1 Cmo20g00052 404369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00052 333 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PANTHER PEROXIDASE 72-RELATED 12 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Cmo20g00052 333 PANTHER PEROXIDASE 58 12 322 - -
Cmo20g00052 333 Coils Coil 333 333 - -
Cmo20g00052 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Cmo20g00052 333 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 Gene3D - 28 322 - -
Cmo20g00052 333 Pfam Peroxidase 40 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 Gene3D Peroxidase, domain 2 160 301 - -
Cmo20g00052 333 ProSiteProfiles Plant heme peroxidase family profile. 23 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00052 333 CDD secretory_peroxidase 23 321 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01252 Cmo-Chr2:7503176 Cmo20g00052 Cmo-Chr20:299374 7.54E-157 dispersed
Cmo20g00049 Cmo-Chr20:291502 Cmo20g00052 Cmo-Chr20:299374 8.71E-139 dispersed
Cmo20g00050 Cmo-Chr20:294690 Cmo20g00052 Cmo-Chr20:299374 3.87E-134 dispersed
Cmo20g00052 Cmo-Chr20:299374 Cmo20g00055 Cmo-Chr20:306631 2.84E-140 dispersed
Cmo20g00054 Cmo-Chr20:303963 Cmo20g00052 Cmo-Chr20:299374 5.56E-93 dispersed
Cmo20g00052 Cmo-Chr20:299374 Cmo20g00053 Cmo-Chr20:301075 7.26E-62 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00052 K00430 - csv:101217781 565.459