Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00052 | ATGGCCTCCTCCAATGCCATACCCATCTTTTTCTTGTTGGCTCTTCTCTTCGGAGCCTCCTCCGCTCAACTCTCCGAAACCTTTTACGACCGAACTTGCCCTCGCCTCCCCAACATTGTCCGCGCCGCCGTCAAGAAAGCAATCGAAACCGACATCCGTGCCGGTGCAAAGCTCATCCGCCTCCATTTCCACGATTGCTTCGTCAATGGCTGTGATGGCTCTGTTTTGCTAGAGGATGCTCCCGGCATAGTCAGTGAGCTGAACTCCCCCGGAAATCAGGGAATTCAAGGACTCGAGATTGTCGACGCCATTAAAGCCGCCGTGGAGAGTGAATGCCCCAATACCGTTTCCTGTGCCGACATCCTAGCTCAGGCTTCTAAGGATTCTGTCGATGTGCAAGGAGGGCCTAGTTGGAGAGTGTTATACGGAAGACGAGACAGTAGAATAGCGAACAAAACAGGGGCCGATAGTGGCCTGGCCAGTCCCTTCGAAACTCTCGCTGAACTCAAAAAGAAATTTTGTGATGTTGGCCTCGGAACCACTGATCTCGTGGCTTTATCTGGAGCGCATACGTTTGGTCGATCGAGATGCAGATTCTTCAGCCACCGATTTGCCAATTTCAACAATACCGGAAGGCCAGATCCATCACTGGACGCTAACTACAGAGGATTCCTTCAAGGGGTTTGTTCTGCAGGTCCAGACACAAGAGCAAATTTCGACCCGACAACACCGGACGTGTTCGACAAAAACTACTACACCAACCTTCAAGCAGGGAAGGGGCTTCTGCAGAGCGATCAAGAGCTGTTCTCCACTGCTGGGGCGGACACCATCGCCATTGTGAACAGCTTCGCGGCCAGAGAAGGCACCTTCTTCAAGGAGTTCCGGCAGTCCATGATCAACATGGGCAACATCAAGCCTTTGACTGGCAGCCGTGGGGAAATCAGAAAAAACTGCAGGAGGGTCAACTCCGCCACGGGTGGAGAAGGCCACGATGTTATGTAA | 1002 | 52.59 | MASSNAIPIFFLLALLFGASSAQLSETFYDRTCPRLPNIVRAAVKKAIETDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEIVDAIKAAVESECPNTVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADSGLASPFETLAELKKKFCDVGLGTTDLVALSGAHTFGRSRCRFFSHRFANFNNTGRPDPSLDANYRGFLQGVCSAGPDTRANFDPTTPDVFDKNYYTNLQAGKGLLQSDQELFSTAGADTIAIVNSFAAREGTFFKEFRQSMINMGNIKPLTGSRGEIRKNCRRVNSATGGEGHDVM | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 299374 | 301022 | - | CmoCh20G000520.1 | Cmo20g00052 | 404369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00052 | 333 | PRINTS | Haem peroxidase superfamily signature | 55 | 69 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Haem peroxidase superfamily signature | 116 | 133 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Haem peroxidase superfamily signature | 134 | 146 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Haem peroxidase superfamily signature | 182 | 197 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Haem peroxidase superfamily signature | 240 | 255 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PANTHER | PEROXIDASE 72-RELATED | 12 | 322 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | ProSitePatterns | Peroxidases active site signature. | 55 | 66 | IPR019794 | GO:0004601 | |
Cmo20g00052 | 333 | PANTHER | PEROXIDASE 58 | 12 | 322 | - | - | |
Cmo20g00052 | 333 | Coils | Coil | 333 | 333 | - | - | |
Cmo20g00052 | 333 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 182 | 192 | IPR019793 | - | |
Cmo20g00052 | 333 | SUPERFAMILY | Heme-dependent peroxidases | 23 | 322 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | Gene3D | - | 28 | 322 | - | - | |
Cmo20g00052 | 333 | Pfam | Peroxidase | 40 | 285 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 134 | 149 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 181 | 193 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 115 | 125 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 254 | 271 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 33 | 52 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 96 | 109 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 238 | 253 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 57 | 77 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | PRINTS | Plant peroxidase signature | 296 | 309 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | Gene3D | Peroxidase, domain 2 | 160 | 301 | - | - | |
Cmo20g00052 | 333 | ProSiteProfiles | Plant heme peroxidase family profile. | 23 | 322 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cmo20g00052 | 333 | CDD | secretory_peroxidase | 23 | 321 | IPR033905 | GO:0004601|GO:0042744 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01252 | Cmo-Chr2:7503176 | Cmo20g00052 | Cmo-Chr20:299374 | 7.54E-157 | dispersed | |
Cmo20g00049 | Cmo-Chr20:291502 | Cmo20g00052 | Cmo-Chr20:299374 | 8.71E-139 | dispersed | |
Cmo20g00050 | Cmo-Chr20:294690 | Cmo20g00052 | Cmo-Chr20:299374 | 3.87E-134 | dispersed | |
Cmo20g00052 | Cmo-Chr20:299374 | Cmo20g00055 | Cmo-Chr20:306631 | 2.84E-140 | dispersed | |
Cmo20g00054 | Cmo-Chr20:303963 | Cmo20g00052 | Cmo-Chr20:299374 | 5.56E-93 | dispersed | |
Cmo20g00052 | Cmo-Chr20:299374 | Cmo20g00053 | Cmo-Chr20:301075 | 7.26E-62 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00052 | K00430 | - | csv:101217781 | 565.459 |