Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00055 ATGGCTTCCCCTAAACTCGCACCCTTCCTTGTTGTGGCGGCTCTGATGCTACGAGCTTCTCACGCCCACCTTAGCCCTTTCTTCCACGCCAAAACATGCCCTCAGCTGCCTTTCCTTGTTCTCAACGTGGTTGCCCAAGCTCTACAAACTGACGACCGAGCAGCTGCCAAGCTCATTCGCCTCCATTTTCATGATTGCTTCGTCAATGGGTGTGATGGGTCTGTGCTATTGGAGGACGTGCCGGGCGTCATCGATAGCGAATTAAACGGACCACCAAACGGTGGGATCCAAGGGCTGGACATCGTGGACAACATTAAATCAGCGGTTGAAAGCGCTTGCCCAGGCGTTGTTTCCTGCGCCGACATCTTAGCCATTTCCTCACAAATCTCTGTTTTCTTGTCGGGAGGGCCAATTTGGGAAGTTCCACTGGGAAGAAAAGACAGCAGGATAGCCAATAGAACCGGAACCTCAAACCTTCCTGGTCCCTCCGAAACCCTAGTCGGGCTTAAACGCAAGTTTGCGGCACAGGGGCTTGATTCTACGGATCTTGTGGCTCTATCAGGAGCACACACGTTCGGGCGAGCGAGATGTTTTTTCTTCACTGGCCGCTTCGACAACTTCAACAACACCGGAAGACCCGACCCAACGCTAAACCCTGTTTACAGGGAGCAGCTTCGACGGCTCTGTACGACCCAACAAACACGAGTCAATTTCGACCCCATAACGCCAACCAAATTCGACAAAGCCTACTATACCAATCTCATAAACCTGAAGGGGCTTCTCCAAAGTGACCAAGACCTGTTCTCCACCCCCAGGGCTGATACCACGGCCATCGTAAAAGATTTCGCCGCTAACGAGCTTGCCTTCTTTACCCAATTTGTGAAATCCATGATCAAAATGGGGAATCTGAAGCCGCCCCCCGGCATCAGATCAGAAATCAGACAAAACTGTAGGAGGGTCAACCCGGTGAAGGCCTATGACATTATGTAA 990 51.72 MASPKLAPFLVVAALMLRASHAHLSPFFHAKTCPQLPFLVLNVVAQALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLEDVPGVIDSELNGPPNGGIQGLDIVDNIKSAVESACPGVVSCADILAISSQISVFLSGGPIWEVPLGRKDSRIANRTGTSNLPGPSETLVGLKRKFAAQGLDSTDLVALSGAHTFGRARCFFFTGRFDNFNNTGRPDPTLNPVYREQLRRLCTTQQTRVNFDPITPTKFDKAYYTNLINLKGLLQSDQDLFSTPRADTTAIVKDFAANELAFFTQFVKSMIKMGNLKPPPGIRSEIRQNCRRVNPVKAYDIM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 306631 308033 - CmoCh20G000550.1 Cmo20g00055 404372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00055 329 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 Gene3D Peroxidase, domain 2 160 300 - -
Cmo20g00055 329 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 ProSiteProfiles Plant heme peroxidase family profile. 23 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Cmo20g00055 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Cmo20g00055 329 PANTHER PEROXIDASE 72-RELATED 15 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 Gene3D - 28 321 - -
Cmo20g00055 329 PANTHER PEROXIDASE 58 15 321 - -
Cmo20g00055 329 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601|GO:0042744
Cmo20g00055 329 Pfam Peroxidase 42 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo20g00055 329 SUPERFAMILY Heme-dependent peroxidases 24 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01250 Cmo-Chr2:7498257 Cmo20g00055 Cmo-Chr20:306631 0 dispersed
Cmo02g01251 Cmo-Chr2:7499807 Cmo20g00055 Cmo-Chr20:306631 3.82E-173 dispersed
Cmo20g00052 Cmo-Chr20:299374 Cmo20g00055 Cmo-Chr20:306631 2.84E-140 dispersed
Cmo20g00055 Cmo-Chr20:306631 Cmo02g01253 Cmo-Chr2:7506324 1.38E-96 dispersed
Cmo20g00054 Cmo-Chr20:303963 Cmo20g00055 Cmo-Chr20:306631 3.70E-73 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00055 K00430 - csv:101211989 570.852