Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00077 ATGGGATCCATGAACTCCAACAATTGGCTTTCCTTTCCACTTTCACCCACTAATCCCTCTTTGCCTCCACATCTTCAAACACCAACTCATGCCCATCACTTCTCTTTGGGAAATTTGGAGAATGACAATATGGATATCCCATTTCAAACCCACGAGTGGAATCTGATAAGTGGTCAAGGTGGAGGTGAAGTTCCGAAAGTAGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGGCAGATCTCATTGGGTTTAACCAAATTCATGAAGCGAATGATACGGATTACTTGTTTCCAATCACAAGATTGGTTCCTCTTCAACAACACCCAACACCCGCGGCTGCTCCCATCAATATGGACTCTACTACTAACTATGACCCTCAAGATAACTCCAACAGCTTGCAGTCTTTGACACTTTCAATGGGCAGTGGGAAGCCCTCTACTTGTGAAACCAGCTCCACCCCTGACAATGCAAACAATAATACCACTCTCGATGTCACTCCTAGAAGAACTTTGGACACTTTTGGGCAAAGGACTTCAATTTATCGCGGAGTGACCAGGCATAGATGGACGGGAAGGTATGAAGCACATTTATGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGCCAAGGTGGGTATGACAAAGAAGATAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTATTGGGGAACATCCACCACCACCAACTTTCCTATTAGTAACTACGAGAAGGAAGTTGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTTCCATTAGAAGGAAGAGTAGTGGGTTTTCAAGGGGCGCGTCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGGAGATGGCAGGCTAGGATTGGCAGAGTGGCAGGAAACAAAGATCTTTATTTGGGAACCTTCAGCACGGAAGAGGAGGCAGCAGAGGCATACGACATAGCGGCCATAAAATTCAGAGGGCTTAATGCAGTCACCAACTTTGACATGAGCCGTTACGACGTGAAAAGCATACTAGAGAGCAACACGCTCCCAATAGGCGGCGGTGCTGCCAAACGTCTGAAAGAGGCACAAGCCATCGAGTCGTCTCGAAAGCGGGACGAAATGATTGCGCTTGGTTCCTCCTCTTCTTTCCAATATGGAAGCTCATCATCGTCTAGTAATTCCTCCAATCACAGGCTACAACAACAACAACAACCCTCTTACCCTCTACTCCAACAGCCTAATTTGAATATGGACCACCATCACCACCACCACCACCACCACCTTCAAACCCAGCCTTTCCTCTCTCTTCAAAACCACCACGACATTTCTCAATACACCAACGATCCCTCCTCCTTTCACCACTCTTCTACTTACATGCACACCCAACTCCAGCTTCACCACCACCAATCTGATAATGCCCCTTATCCTAACAACAACAACAACAACCATCAATTCTACGGCGGCGCTGGTGGTGGGTATCTTCATAACCATCCGGGTTTGCTCCATGGGATGATCAACATGGGCGGCGGTGGCGGAGGGTCTAATTTGGAGAGTAGTAACAACAACAATAATGCGTTGTCCAGTGCAAATCATTTTGAGAATCCTAATAATAATAGTAATGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACATCGGCCACCGCGAACAACGGCGCCCCAGCTGAAGAATACGCACTGGTTAAGGTTGACTATGATATGCCGCCTAATGCTGGTGGGTATGGTAGCTGGTCGGGGGATTCGGTGCAGGGTTCTAACCCTGGGGTTTTCTCCATGTGGAACGATTGA 1824 47.37 MGSMNSNNWLSFPLSPTNPSLPPHLQTPTHAHHFSLGNLENDNMDIPFQTHEWNLISGQGGGEVPKVADFLGVSKAENEADLIGFNQIHEANDTDYLFPITRLVPLQQHPTPAAAPINMDSTTNYDPQDNSNSLQSLTLSMGSGKPSTCETSSTPDNANNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSSSSFQYGSSSSSSNSSNHRLQQQQQPSYPLLQQPNLNMDHHHHHHHHHLQTQPFLSLQNHHDISQYTNDPSSFHHSSTYMHTQLQLHHHQSDNAPYPNNNNNNHQFYGGAGGGYLHNHPGLLHGMINMGGGGGGSNLESSNNNNNALSSANHFENPNNNSNGGYLGNAFGMGSTSATANNGAPAEEYALVKVDYDMPPNAGGYGSWSGDSVQGSNPGVFSMWND 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 403519 406139 - CmoCh20G000770.1 Cmo20g00077 404394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00077 607 PRINTS Ethylene responsive element binding protein signature 182 193 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 PRINTS Ethylene responsive element binding protein signature 320 340 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 ProSiteProfiles AP2/ERF domain profile. 181 244 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 Gene3D AP2/ERF domain 280 340 IPR036955 GO:0003700|GO:0006355
Cmo20g00077 607 Gene3D AP2/ERF domain 181 246 IPR036955 GO:0003700|GO:0006355
Cmo20g00077 607 SUPERFAMILY DNA-binding domain 279 340 IPR016177 GO:0003677
Cmo20g00077 607 MobiDBLite consensus disorder prediction 466 487 - -
Cmo20g00077 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 606 - -
Cmo20g00077 607 Pfam AP2 domain 181 236 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 Pfam AP2 domain 281 330 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 MobiDBLite consensus disorder prediction 385 436 - -
Cmo20g00077 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 606 - -
Cmo20g00077 607 MobiDBLite consensus disorder prediction 519 542 - -
Cmo20g00077 607 SUPERFAMILY DNA-binding domain 180 246 IPR016177 GO:0003677
Cmo20g00077 607 SMART rav1_2 280 344 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 SMART rav1_2 181 250 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 MobiDBLite consensus disorder prediction 139 166 - -
Cmo20g00077 607 MobiDBLite consensus disorder prediction 385 417 - -
Cmo20g00077 607 CDD AP2 180 246 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 CDD AP2 279 340 IPR001471 GO:0003700|GO:0006355
Cmo20g00077 607 ProSiteProfiles AP2/ERF domain profile. 280 338 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01275 Cmo20g00077 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00837 Cmo-Chr5:5236754 Cmo20g00077 Cmo-Chr20:403519 1.41E-128 dispersed
Cmo09g00310 Cmo-Chr9:1336180 Cmo20g00077 Cmo-Chr20:403519 7.91E-19 dispersed
Cmo11g00384 Cmo-Chr11:1921034 Cmo20g00077 Cmo-Chr20:403519 6.21E-10 dispersed
Cmo12g01004 Cmo-Chr12:9385816 Cmo20g00077 Cmo-Chr20:403519 9.91E-129 dispersed
Cmo16g00804 Cmo-Chr16:4136796 Cmo20g00077 Cmo-Chr20:403519 3.79E-122 transposed
Cmo02g01275 Cmo-Chr2:7603976 Cmo20g00077 Cmo-Chr20:403519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11687 PF00847 AP2 1.80E-08 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00077 K09285 - csv:101207097 865.914