Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00081 ATGGTTCAGAGCTCAAGGACTCCAGGAACACTTGTCCATGGTGGTAGCAACCTGACTATTGGTCGGGTTACAGCTGGTTTGGAGTTCAACCGCCCTATCAGACCAGACCAATGTGGAGTGGAACTGGAGGACTTTATTTCCAGGCCTTGTGAAGACGAGGAGGATGAGGAGGAGGAGAGCGTTACAGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTTCTGATCTGATTTTGAGGCTCTCTTCAACTGAGATCTCAGACAAGGAAGACCAACAAGAAGCTGTCCCTGTTGTTGTTCCTAATTACTACTCCTCCTCTACTGCTGGACTCAACAAGGGTCAGTATTGGATTCCCACTCCTGCTCAGATTCTCATTGGTCCAACTCACTTCTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACGGCGATGCTTAGGCTGCCATGTTACTGCTGTGCGCCAGGGTGCAGAAACAACATAGACCATCCAAGGTCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACGCATTACAAAAGAAAGCATGGAATCAAGCCATTTACATGTAGAAAATGTGGGAAGGCCTTTGCTGTGAGAGGGGACTGGAGAACCCACGAGAAGAATTGTGGGAAGCTTTGGCACTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAGGCCTTTGGACATGGCCATGCAGCTTATGGGATTGACTCTTTTGACGAAGATGATGAGGCAGCTTCTGAGATTGAACATGATAATGACTTGTCTCTAAGGAATGGAGATTGA 891 47.03 MVQSSRTPGTLVHGGSNLTIGRVTAGLEFNRPIRPDQCGVELEDFISRPCEDEEDEEEESVTVALHLGLPTPPSSDLILRLSSTEISDKEDQQEAVPVVVPNYYSSSTAGLNKGQYWIPTPAQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSFDEDDEAASEIEHDNDLSLRNGD 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 418949 423726 - CmoCh20G000810.1 Cmo20g00081 404398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00081 296 SUPERFAMILY beta-beta-alpha zinc fingers 196 235 IPR036236 -
Cmo20g00081 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Cmo20g00081 296 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Cmo20g00081 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Cmo20g00081 296 Gene3D Classic Zinc Finger 183 268 - -
Cmo20g00081 296 PANTHER ZINC FINGER PROTEIN WIP2 52 289 IPR043584 GO:0003700|GO:0010468
Cmo20g00081 296 SMART c2h2final6 215 235 IPR013087 -
Cmo20g00081 296 SMART c2h2final6 241 264 IPR013087 -
Cmo20g00081 296 SMART c2h2final6 131 153 IPR013087 -
Cmo20g00081 296 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 52 289 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01279 Cmo20g00081 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01280 Cmo-Chr2:7622991 Cmo20g00081 Cmo-Chr20:418949 2.83E-14 dispersed
Cmo06g00072 Cmo-Chr6:444773 Cmo20g00081 Cmo-Chr20:418949 3.24E-127 dispersed
Cmo07g01338 Cmo-Chr7:7574902 Cmo20g00081 Cmo-Chr20:418949 1.39E-127 dispersed
Cmo14g00447 Cmo-Chr14:2135405 Cmo20g00081 Cmo-Chr20:418949 2.90E-125 dispersed
Cmo17g00925 Cmo-Chr17:8249266 Cmo20g00081 Cmo-Chr20:418949 2.00E-114 wgd
Cmo02g01279 Cmo-Chr2:7617958 Cmo20g00081 Cmo-Chr20:418949 5.93E-164 wgd
Cmo20g00081 Cmo-Chr20:418949 Cmo08g00525 Cmo-Chr8:3286506 5.99E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11688 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00081 - - bhj:120089206 424.861