Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00092 ATGCAGTCAAAGCCTAGAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGATACAATCAGATTTCCCCGCCAGCAGCAGGAGGAAATTTGTCCAATTCAACATCACTGGAATGTCCTAATGGTGCCTCAGAATCTAATGACGGACCATCAATGTCAAATGATGATTTGAATGAAGATGATGATGATGACACCACAAAAGATTCACACGCTGTAAGTTATGGGCAAGTACAGAACAACAGTCAGCATGCTGTTTCTGCTGCACCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCTATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCGCATGCTAGAATGGCTTTACCTCTTGAGGTGACACAGGAACCTGTTTTTGTGAATGCCAAACAATATCAAGGGATCCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAATTAGAAAGCCGTATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAGTTAATTCTTCGAGTTCTACTATGAAGAACAAGGACTCCGGTTCTGGTCAAGCTTTCTCGTCGCACTCTGCTGGTTCATCGGGTTCTGAAGCTGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGCGAGGACGCAGTTGCATGAGGCGTACAAAGCTCGAAGTTATGTGAATGGCAGTGAACAATTTCATAATTACAGTAGCTTCCAAGCTTCCTCATATGCTTTACGGTCTGGTGAGAGAGGTGATGATGGAGACTGTTCAGGACAGCAACGAGGAAGCATCTCAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAAGTGA 1032 45.54 MQSKPRSVNQLESEPPNMQQTSSYSEPWWRSIGYNQISPPAAGGNLSNSTSLECPNGASESNDGPSMSNDDLNEDDDDDTTKDSHAVSYGQVQNNSQHAVSAAPTVHGGCITQPPQLELVGHSIACASNLYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGSGGRFAKKNEVNSSSSTMKNKDSGSGQAFSSHSAGSSGSEAAPCALAETWNSSNGQQEARTQLHEAYKARSYVNGSEQFHNYSSFQASSYALRSGERGDDGDCSGQQRGSISENQAAQRRLAIK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 465885 471129 + CmoCh20G000920.1 Cmo20g00092 404409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00092 343 MobiDBLite consensus disorder prediction 1 84 - -
Cmo20g00092 343 MobiDBLite consensus disorder prediction 226 257 - -
Cmo20g00092 343 Gene3D - 167 229 - -
Cmo20g00092 343 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Cmo20g00092 343 MobiDBLite consensus disorder prediction 207 221 - -
Cmo20g00092 343 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Cmo20g00092 343 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Cmo20g00092 343 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 334 IPR001289 GO:0003700|GO:0006355
Cmo20g00092 343 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Cmo20g00092 343 MobiDBLite consensus disorder prediction 1 68 - -
Cmo20g00092 343 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Cmo20g00092 343 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 334 - -
Cmo20g00092 343 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Cmo20g00092 343 MobiDBLite consensus disorder prediction 312 343 - -
Cmo20g00092 343 MobiDBLite consensus disorder prediction 207 259 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00972 Cmo20g00092 CCT
Cmo11g00859 Cmo20g00092 CCT
Cmo11g00859 Cmo20g00092 ECH
Cmo10g00972 Cmo20g00092 ECH
Cmo02g01293 Cmo20g00092 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01443 Cmo-Chr3:10452672 Cmo20g00092 Cmo-Chr20:465885 5.13E-36 dispersed
Cmo20g00092 Cmo-Chr20:465885 Cmo14g00365 Cmo-Chr14:1694864 9.43E-28 dispersed
Cmo10g00972 Cmo-Chr10:4904211 Cmo20g00092 Cmo-Chr20:465885 3.71E-92 wgd
Cmo11g00859 Cmo-Chr11:4378215 Cmo20g00092 Cmo-Chr20:465885 4.91E-96 wgd
Cmo17g00931 Cmo-Chr17:8289609 Cmo20g00092 Cmo-Chr20:465885 6.61E-49 wgd
Cmo02g01293 Cmo-Chr2:7695004 Cmo20g00092 Cmo-Chr20:465885 0 wgd
Cmo20g00092 Cmo-Chr20:465885 Cmo08g00517 Cmo-Chr8:3225088 2.26E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11690 PF02045 CBFB_NFYA 4.50E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00092 K08064 - csv:101212961 596.66