Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00116 ATGTGGTCCGCCGCGGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTCGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCACCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGAATTTGAGCGACGGCGGCGGTGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGA 1122 54.46 MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPSSSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNYGNQIR 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 589618 591557 + CmoCh20G001160.1 Cmo20g00116 404433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00116 373 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 262 309 IPR006511 -
Cmo20g00116 373 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 372 IPR007818 GO:0003700|GO:0006355
Cmo20g00116 373 MobiDBLite consensus disorder prediction 209 253 - -
Cmo20g00116 373 MobiDBLite consensus disorder prediction 320 343 - -
Cmo20g00116 373 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 372 - -
Cmo20g00116 373 MobiDBLite consensus disorder prediction 323 343 - -
Cmo20g00116 373 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 157 199 IPR006510 -
Cmo20g00116 373 Pfam Domain of unknown function (DUF702) 155 310 - -
Cmo20g00116 373 MobiDBLite consensus disorder prediction 208 257 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00893 Cmo20g00116 CCT
Cmo02g01315 Cmo20g00116 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01400 Cmo-Chr4:7135276 Cmo20g00116 Cmo-Chr20:589618 1.72E-62 dispersed
Cmo18g00864 Cmo-Chr18:9957782 Cmo20g00116 Cmo-Chr20:589618 4.74E-60 dispersed
Cmo19g00311 Cmo-Chr19:2339193 Cmo20g00116 Cmo-Chr20:589618 2.57E-40 dispersed
Cmo11g00893 Cmo-Chr11:4577275 Cmo20g00116 Cmo-Chr20:589618 1.14E-75 wgd
Cmo02g01315 Cmo-Chr2:7811668 Cmo20g00116 Cmo-Chr20:589618 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11693 PF05142 DUF702 1.40E-60 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00116 - - cmos:111448991 670.618