Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00135 ATGGAACAGAGGAAGTACAGAGCCGATCTTCTTTCACCGGCCTTCCTTGTCCTCCTCCTTTTCCTCTCCCTTTCCGGTCGATCGGCTGTTCACGCCTACAAGAACTACACCGTCGGAGACTCCCTAGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTATCAAAAATGGACGGTCGGCAAGAACTTCAGCCTCGGCGATTTTCTAATTTTTAACACCGACAACAATCACTCGGTTGTGCTTACGTATAATTTCACCACATACAAGCTATGCGACTACGACGACGCATCGGAACATGACACGACAGAATGGTCCGCTGCTGACCCGTCGGCGACCACTCCATACGCCGTGACGGTGGCCGTCCCACTGCTAAAAGAAGGGACCAACTATTTCTTCTCCGGCCACTACGACGGAGAGCAATGTCAAAATGGGCAACAATTCAAAATAAACGTCACTCACGGACAGGGCCTCCCGAAGAGCATGAGAGATTCTTCCGACGAAGCTCCTGCTCCTGTAGTTCCCGACACCGGCGACCAAACTGAATCTGCTCCCGACACCATTGTCCCTTCCAACTTCGACAATCCCGTAAACGACGTAGCTGATAGCGACAAGGAGGTTTCGGGCTCCGTTTCGCTATCGCTTCACTCGAAGTTTAATGAGTTTTTCTTCGTGTTAGCTGGTATTGCCTCTGCCTGCATTTTTCTCTGTACTGAATGA 720 50.83 MEQRKYRADLLSPAFLVLLLFLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQKWTVGKNFSLGDFLIFNTDNNHSVVLTYNFTTYKLCDYDDASEHDTTEWSAADPSATTPYAVTVAVPLLKEGTNYFFSGHYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVVPDTGDQTESAPDTIVPSNFDNPVNDVADSDKEVSGSVSLSLHSKFNEFFFVLAGIASACIFLCTE 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 690083 692791 - CmoCh20G001350.1 Cmo20g00135 404452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00135 239 ProSiteProfiles Phytocyanin domain profile. 34 154 IPR003245 GO:0009055
Cmo20g00135 239 CDD Phytocyanin 34 152 - -
Cmo20g00135 239 PANTHER BLUE COPPER PROTEIN 12 220 IPR039391 GO:0009055
Cmo20g00135 239 Gene3D - 33 157 IPR008972 -
Cmo20g00135 239 MobiDBLite consensus disorder prediction 180 194 - -
Cmo20g00135 239 Pfam Plastocyanin-like domain 44 146 IPR003245 GO:0009055
Cmo20g00135 239 SUPERFAMILY Cupredoxins 34 152 IPR008972 -
Cmo20g00135 239 MobiDBLite consensus disorder prediction 157 194 - -
Cmo20g00135 239 PANTHER BNAA08G26900D PROTEIN 12 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00135 - - - cpep:111776932 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00916 Cmo-Chr8:5975372 Cmo20g00135 Cmo-Chr20:690083 1.42E-34 dispersed
Cmo17g00026 Cmo-Chr17:124963 Cmo20g00135 Cmo-Chr20:690083 9.58E-38 dispersed
Cmo20g00135 Cmo-Chr20:690083 Cmo05g00540 Cmo-Chr5:2612412 3.96E-14 dispersed
Cmo20g00135 Cmo-Chr20:690083 Cmo02g01329 Cmo-Chr2:7897001 9.57E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo12g00319 CST 21 165 Phytocyanin Superfamily AT5G25090 57.7 3.5e-38 155.6
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo20g00135 . 19 229 Phytocyanin Superfamily AT1G08500 59.4 3.0e-63 239.2
Cmo10g01025 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g00135 Cmo_Chr20 FPKM 13.925757 15.897203 22.412819 21.786564 34.636864 34.990978 34.733276 26.483458 25.426149 26.513178