Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00141 ATGAATATTGCTCTCGCAACATTGCTCATCTTCCTCGCAGCTTTTGCACCCATCTCTTCTGCTACAACAGAGGTTCCTGCAGAGAAGTCGCAGTTAGAAGCTTGGTTTTCCGGACATGTGAAGCCCTTAGCCGACCGCAAGGCGGAGCTTGATCCCGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTGAAAGTAAGGGCCGACGGAAGCGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCAAACGGGTCGTGATTTGGATTGGGGAAGGAGTATATAAAGAGAAGCTTACGATCGAGAGAAATAAGCCATTCATTACCCTTTACGGTTCCCCTAAGAATATGCCAAAATTGACATTTGATGGAGATAACAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCGTGGAGTCTGAGTATTTTGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCATTGGCGGCGAGAATCAGAGGTAATAAAGCCGCAATTTACAATTGCAAATTCATAGGGTTCCAAGACACCCTGTGCGACGACGACGGGATGCATGTGTACAAGGATTGCGTCATTGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGGCCCTGTATTTGAACACTCAGCTGAATGTGCTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAGAAGGAAGACGACCCCAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGCCAAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCCGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCTGCTTTTGACAAGACTGTATTCTTTGGAGAATACAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTGTAAAATTCAGCAAACAGCTGACTGAAGCACAAGTGAAACCCTTCATCAACCTTGATTACGTGCAGGCTCAAAAGTGGCTGCTTCCTCCTCCCAAACTATAG 1083 50.32 MNIALATLLIFLAAFAPISSATTEVPAEKSQLEAWFSGHVKPLADRKAELDPALVAAEESSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNKPFITLYGSPKNMPKLTFDGDNKKYGTVYSGTLTVESEYFVAANLVIENTSPRPDARKGGPALAARIRGNKAAIYNCKFIGFQDTLCDDDGMHVYKDCVIEGTVDFIFGKATALYLNTQLNVLGEGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLARSWRPWSRVVFAYTTIADILHPEGWDDMNNPAFDKTVFFGEYKCSGPGAETSKRVKFSKQLTEAQVKPFINLDYVQAQKWLLPPPKL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 706436 708130 - CmoCh20G001410.1 Cmo20g00141 404458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00141 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 355 - -
Cmo20g00141 360 Gene3D - 57 356 IPR012334 -
Cmo20g00141 360 PANTHER PECTINESTERASE 63-RELATED 29 355 - -
Cmo20g00141 360 Pfam Pectinesterase 64 349 IPR000070 GO:0030599|GO:0042545
Cmo20g00141 360 SUPERFAMILY Pectin lyase-like 60 354 IPR011050 -
Cmo20g00141 360 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00141 Cmo-Chr20:706436 Cmo20g00147 Cmo-Chr20:720335 0 dispersed
Cmo20g00137 Cmo-Chr20:696185 Cmo20g00141 Cmo-Chr20:706436 0 proximal
Cmo20g00141 Cmo-Chr20:706436 Cmo20g00142 Cmo-Chr20:708698 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00141 K01051 - csv:101205095 529.635