Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00142 ATGGAATATTGCATTAATGCCGTCGCTCTCACCAGATTGGTTATCTTCCTAGCCGCTTTCGCAGCCATCTTCGGTGCTACACCACCGGTTTCCGAAGAACCCAACTGCGGTGCTGCATCACCGGCTTCCGCAGAAGGCACCTGCTCTGCTACACCGGTTTCCGCAGAAGGCCCCTCCGCTGCTACTTCACCGGATCCCCCCGCAGGCGCCACCTCCGCCTCTCCTTCATCAGAGGTTCCCGCAGAAAAGTCGCAATTAGAAGCTTGGTTTTCCGAAAACGTGAAGCCCTTAAGCGCTCGCAAGGCGGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAACGCCACCGTGGTCAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCCACCGCGTCGTGATTTGGATTGGAGAAGGAGTTTACAAGGAGAAGCTTACGATCGAGAGAAATAAACCATTCATTACCCTTTACGGTTCCCCTAAGAATATGCCAAAATTGACATTTGATGGAGATTCCAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCATGGAGGCTGAGTATTTTGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCATTGGCGGCGAGAATCAGAGGGAATAAAGCCGCAATTTACAACTGCAAGTTCATAGGGTTTCAAGACACCCTTTGCGACGACGATGGGATGCATGTGTACAAGGATTGCTTCATCGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGTCCCTGTATTTGAACAGTCAGCTGAATGTGGTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCCAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGCCAAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCGTACACCACCATTGCCGACGTCCTTCATCCTGAAGGCTGGGACGACATGAACCACCCTGATTTCGACAAGACGGTTTTCTTCGGAGAATATAAGAGTTCGGGGCCGGGAGCGGAGACGAGCAGCCGCATAAAATTCAGCAAACAGCTGAGTGATGCAGAAGTGAAACCGTTCCTCAGCCTTGATTACGTGCAGGCCCAAAAGTGGCTGCTTCCTCCCCCCAAGCTGTAG 1245 52.61 MEYCINAVALTRLVIFLAAFAAIFGATPPVSEEPNCGAASPASAEGTCSATPVSAEGPSAATSPDPPAGATSASPSSEVPAEKSQLEAWFSENVKPLSARKAELDPALVAAEENATVVKVRADGSGDFKTVTEAIASVPAGNTHRVVIWIGEGVYKEKLTIERNKPFITLYGSPKNMPKLTFDGDSKKYGTVYSGTLTMEAEYFVAANLVIENTSPRPDARKGGPALAARIRGNKAAIYNCKFIGFQDTLCDDDGMHVYKDCFIEGTVDFIFGKATSLYLNSQLNVVGEGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLARSWRPWSRVVFAYTTIADVLHPEGWDDMNHPDFDKTVFFGEYKSSGPGAETSSRIKFSKQLSDAEVKPFLSLDYVQAQKWLLPPPKL 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 708698 710014 + CmoCh20G001420.1 Cmo20g00142 404459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00142 414 Pfam Pectinesterase 118 403 IPR000070 GO:0030599|GO:0042545
Cmo20g00142 414 Gene3D - 112 410 IPR012334 -
Cmo20g00142 414 MobiDBLite consensus disorder prediction 42 58 - -
Cmo20g00142 414 SUPERFAMILY Pectin lyase-like 115 408 IPR011050 -
Cmo20g00142 414 MobiDBLite consensus disorder prediction 65 81 - -
Cmo20g00142 414 ProSitePatterns Pectinesterase signature 2. 264 273 IPR033131 -
Cmo20g00142 414 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 83 409 - -
Cmo20g00142 414 MobiDBLite consensus disorder prediction 32 84 - -
Cmo20g00142 414 PANTHER PECTINESTERASE 63-RELATED 83 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00142 Cmo-Chr20:708698 Cmo20g00147 Cmo-Chr20:720335 0 dispersed
Cmo20g00141 Cmo-Chr20:706436 Cmo20g00142 Cmo-Chr20:708698 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00142 K01051 - csv:101205095 531.946