Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00144 ATGAAATATGCTCTCACGACATTGGTGATCTTACTAGCAGTTTTTGCACCCATCTCCTGTGCTACAACAGAGGTTCCTGCAGAAAAGTCGCGATTAGAAGCTTGGTTTTCGGAACATGTGAAGCCCTTAGCGGCGCGCAAGGCGGATCTTGATCCCGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTGAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACTATCACCAAAGCCATTGCCAGCGTTCCTGTTGGTAACACCAAGCGCGTCGTGATTTGGATTGGAGGAGGGGTTTATAAAGAGAAGGTTACGATCAATAGGAATAAGCCATTTATTACCCTTTATGGCTCTCCTAACAATATGCCAAACTTGACATTTGATGGAGACGCTACAAAATACGGCACCATTTACAGTGCAACTTTGATAGTTGAGGCTGATTATTTCGTTGCTGCAAATCTCGTGATTGAGAATTCATCTCCAAGGCCGGAAGGGATAAAAGGAGGTCAGGCATTAGCGGCAAGAATCAGAGGTAATAAAGCTGCAATTTACAATTGCAAGTTCATAGGATTTCAAGACACCCTGTGCGACGATGACGGGTTGCATTTTTACAAAGATTGCTTCGTCCAGGGCACAGTGGACTTCATCTTCGGGAAGGGAACGTCCCTTCATTTGAACACTCAGATGAACGTGGTGGGAATCGGGGGATTGGGAGTGGTGGCAGCTCATTCAAGAGAAAAGGAAGATGACCCGAGTGGATATGTGTTCGCGCATTGCAGCATCACAGGAACAGGGGGGAAAAACACTTATCTGGGAAGATCATGGAGGCCATGGTCTAGAGTTGTGTTCGCCTACACCAGCATTGCGGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCCGCTTATGACCATACGGTTTTCTACGGAGAATACAAGTGTTCGGGGCTGGGAGCGGTATCCACCGGCCGTGCCAAATTCGGGAAGCAGCTCACTAAAGCACAAGTGAAACCCTTCATCAACCTTGATTTCGTGCACGCCCACAAGTGGTTGCTTCCTCCTCCCAAACTATAG 1083 48.38 MKYALTTLVILLAVFAPISCATTEVPAEKSRLEAWFSEHVKPLAARKADLDPALVAAEESSTVVKVRADGSGDFKTITKAIASVPVGNTKRVVIWIGGGVYKEKVTINRNKPFITLYGSPNNMPNLTFDGDATKYGTIYSATLIVEADYFVAANLVIENSSPRPEGIKGGQALAARIRGNKAAIYNCKFIGFQDTLCDDDGLHFYKDCFVQGTVDFIFGKGTSLHLNTQMNVVGIGGLGVVAAHSREKEDDPSGYVFAHCSITGTGGKNTYLGRSWRPWSRVVFAYTSIADILHPEGWDDMNNPAYDHTVFYGEYKCSGLGAVSTGRAKFGKQLTKAQVKPFINLDFVHAHKWLLPPPKL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 717007 718169 + CmoCh20G001440.1 Cmo20g00144 404461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00144 360 PANTHER PECTINESTERASE 63-RELATED 29 355 - -
Cmo20g00144 360 Pfam Pectinesterase 64 349 IPR000070 GO:0030599|GO:0042545
Cmo20g00144 360 SUPERFAMILY Pectin lyase-like 60 354 IPR011050 -
Cmo20g00144 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 355 - -
Cmo20g00144 360 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
Cmo20g00144 360 Gene3D - 57 356 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00144 Cmo-Chr20:717007 Cmo20g00147 Cmo-Chr20:720335 0 dispersed
Cmo20g00144 Cmo-Chr20:717007 Cmo20g00146 Cmo-Chr20:719470 1.96E-148 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00144 K01051 - csv:101205095 539.265