Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo20g00146 | ATGCCAAAATTGACATTTGATGGAGATTCCAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCATGGAGGCTGAGTATTTTGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGGATGCGAGAAAAGGAGGTCCGGCATTGGCGGCGAGAATCAGAGGTAATAAAGCCGCAATTTACAACTGCAAGTTCATAGGGTTTCAAGACACCCTTTGCGACGACGATGGGATGCATGTGTACAAGGATTGCTTCATCGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGTCCCTGTATTTGAACAGTCAGCTGAATGTGGTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAAGACGACCCGAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGCCTAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCGTACACCACCATTGCCGACGTCCTTCATCCTGAAGGCTGGGACGACATGAACCACCCTGATTTCGACAAGACGGTTTTCTTCGGAGAATATAAGAGTTCGGGGCCGGGAGCGGAGACGAGCAGCCGCATAAAATTCAGCAAACAGCTGAGTGATGCAGAAGTGAAACCGTTCCTCAGCCTTGATTACGTGCAGGCCCAAAAGTGGCTGCTTCCTCCCCCCAAGCTGTAG | 717 | 50.91 | MPKLTFDGDSKKYGTVYSGTLTMEAEYFVAANLVIENTSPRPDARKGGPALAARIRGNKAAIYNCKFIGFQDTLCDDDGMHVYKDCFIEGTVDFIFGKATSLYLNSQLNVVGEGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLARSWRPWSRVVFAYTTIADVLHPEGWDDMNHPDFDKTVFFGEYKSSGPGAETSSRIKFSKQLSDAEVKPFLSLDYVQAQKWLLPPPKL | 238 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 719470 | 720545 | - | CmoCh20G001460.1 | Cmo20g00146 | 404463 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo20g00146 | 238 | PANTHER | PECTINESTERASE 63-RELATED | 1 | 233 | - | - | |
| Cmo20g00146 | 238 | ProSitePatterns | Pectinesterase signature 2. | 88 | 97 | IPR033131 | - | |
| Cmo20g00146 | 238 | Pfam | Pectinesterase | 12 | 227 | IPR000070 | GO:0030599|GO:0042545 | |
| Cmo20g00146 | 238 | Gene3D | - | 3 | 234 | IPR012334 | - | |
| Cmo20g00146 | 238 | SUPERFAMILY | Pectin lyase-like | 11 | 232 | IPR011050 | - | |
| Cmo20g00146 | 238 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 1 | 233 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo20g00146 | Cmo-Chr20:719470 | Cmo20g00149 | Cmo-Chr20:726122 | 6.49E-166 | dispersed | |
| Cmo20g00144 | Cmo-Chr20:717007 | Cmo20g00146 | Cmo-Chr20:719470 | 1.96E-148 | proximal | |
| Cmo20g00146 | Cmo-Chr20:719470 | Cmo20g00147 | Cmo-Chr20:720335 | 1.14E-165 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo20g00146 | K01051 | - | csv:101205095 | 384.8 |