Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00147 ATGGCTTCGGTGACAGTCTTGAAATCTCCACTTCCGTCGGCCCTTACTTTGACCACGGTGGCGTTTTCTTCAGCGGCCACAAGGGCTGGATCAAGCTCCGCCTTGCGAGCGCTTAAGGGCTTCACGTTTTCGGAAAACCAAGCTTCTAATTGCGACTTTTCTGCGGGAACCTCTGATGAAGGAGAGGCGGAGGTGGCGCCTGCGGGGGGATCCGGTGAAGTAGCAGCGGAGGGGCCTTCTGCGGAAACCGGTGTAGCAGAGCAGGTGCCTTCTGCGGAAGCCGGTGATGCAGCACCGCAGTTGGGTTCTTCGGAAACCGGTGGTGTAGCAGCGAAGATGGCTGCGAAAGCGGCTAGGAAGATAACCAATCTGTTTAACAATAAAATAAATCACTTAAATATGAATATTGCTCTCACAACATTGCTCATCTTCCTAGCAGCTTTTGCACCCATCTCTTCTGCTACAACAGAGGTTCCTGCAGAGAAGTCGCAGTTAGAAGCTTGGTTTTCCGGACATGTGAAGCCCTTAGCCGACCGCAAGGCGGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTGAAAGTAAGGGCCGACGGAAGCGGAGACTTCAAGACTGTCACCGAAGCCATTGCCAGCGTTCCAGCCGGTAACACCAAACGCGTCGTGATTTGGATTGGGGAAGGAGTTTATAAAGAGAAGCTTACGATCGAGAGAAATAAGCCATTCATTACCCTTTACGGTTCCCCCAAGAATATGCCAAAATTGACATTTGATGGAGATAACAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCGTGGAGTCTGAGTATTTTGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGCATGCCGGAAAAGGAGGTCCGGCATTGGCGGCGAGAATCAGAGGTAATAAAGCCACAATTTACAATTGCAAATTCATAGGGTTCCAAGACACCCTGTGCGACGACGACGGGATGCATGTGTACAAGGATTGCGTCATTGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGGCCCTGTATTTGAACACTGAGCTGAAAGTGCTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAGGACGACCCCAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGCCAAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCCGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCTTCTTTTGACAAGACTGTTTTCTTTGGAGAATATAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTGTAAAATTCAGCAAACAGCTGACTGAAGCACAAGTGAAACCCTTCATCAACCTTGATTACGTGGAGGCCAAAAAGTGGCTGCTTCCTCCTCCCAAACTATAG 1482 51.15 MASVTVLKSPLPSALTLTTVAFSSAATRAGSSSALRALKGFTFSENQASNCDFSAGTSDEGEAEVAPAGGSGEVAAEGPSAETGVAEQVPSAEAGDAAPQLGSSETGGVAAKMAAKAARKITNLFNNKINHLNMNIALTTLLIFLAAFAPISSATTEVPAEKSQLEAWFSGHVKPLADRKAELDPALVAAEESSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNKPFITLYGSPKNMPKLTFDGDNKKYGTVYSGTLTVESEYFVAANLVIENTSPRPHAGKGGPALAARIRGNKATIYNCKFIGFQDTLCDDDGMHVYKDCVIEGTVDFIFGKATALYLNTELKVLGEGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLARSWRPWSRVVFAYTTIADILHPEGWDDMNNPSFDKTVFFGEYKCSGPGAETSKRVKFSKQLTEAQVKPFINLDYVEAKKWLLPPPKL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 720335 722779 + CmoCh20G001470.1 Cmo20g00147 404464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00147 493 MobiDBLite consensus disorder prediction 54 103 - -
Cmo20g00147 493 SUPERFAMILY Pectin lyase-like 193 487 IPR011050 -
Cmo20g00147 493 PANTHER PECTINESTERASE 63-RELATED 161 488 - -
Cmo20g00147 493 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 161 488 - -
Cmo20g00147 493 ProSitePatterns Pectinesterase signature 2. 343 352 IPR033131 -
Cmo20g00147 493 Pfam Pectinesterase 197 481 IPR000070 GO:0030599|GO:0042545
Cmo20g00147 493 Gene3D - 190 489 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00538 Cmo-Chr16:2628087 Cmo20g00147 Cmo-Chr20:720335 2.06E-84 dispersed
Cmo20g00137 Cmo-Chr20:696185 Cmo20g00147 Cmo-Chr20:720335 0 dispersed
Cmo20g00141 Cmo-Chr20:706436 Cmo20g00147 Cmo-Chr20:720335 0 dispersed
Cmo20g00142 Cmo-Chr20:708698 Cmo20g00147 Cmo-Chr20:720335 0 dispersed
Cmo20g00144 Cmo-Chr20:717007 Cmo20g00147 Cmo-Chr20:720335 0 dispersed
Cmo20g00147 Cmo-Chr20:720335 Cmo20g01092 Cmo-Chr20:10397241 0 dispersed
Cmo20g01093 Cmo-Chr20:10398729 Cmo20g00147 Cmo-Chr20:720335 1.27E-19 dispersed
Cmo20g00138 Cmo-Chr20:697098 Cmo20g00147 Cmo-Chr20:720335 1.47E-25 proximal
Cmo20g00147 Cmo-Chr20:720335 Cmo20g00149 Cmo-Chr20:726122 0 proximal
Cmo20g00146 Cmo-Chr20:719470 Cmo20g00147 Cmo-Chr20:720335 1.14E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00147 K01051 - csv:101205095 515.383