Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00149 ATGAATATTGCTCTCACAACATTGCTCATCTTCCTCGCAGCTTTTGCACCCATCTCTTCTGCTACAACAGAGGTTCCTGCAGAGAAGTCGCAGTTAGAAGCTTGGTTTTCCGGACATGTGAAGCCCTTAGCCGACCGCAAGGCGGAGCTTGATCCAGCCCTTGTGGCCGCTGAAGAAAGCTCCACCGTCGTGAAAGTAAGGGCCGACGGAAGCGGAGACTTCAAGACTGTCACCGAAGCCATCGCCAGCGTTCCAGCCGGTAACACCAAACGCGTCGTGATTTGGATTGGGGAAGGAGTTTATAAAGAGAAGCTTACGATCGAGAGAAATAAGCCATTCATTACCCTTTACGGTTCCCCCAAGAATATGCCAAAATTGACATTTGATGGAGATAACAAAAAATACGGCACCGTGTACAGTGGAACTTTGACCGTGGAGTCTGAGTATTTTGTTGCTGCCAATCTCGTGATCGAGAACACTTCTCCAAGACCGCATGCCGGAAAAGGAGGTCCGGCATTGGCGGCGAGAATCAGAGGTAATAAAGCCACAATTTACAATTGCAAATTCATAGGGTTCCAAGACACCCTGTGCGACGACGACGGGATGCATGTGTACAAGGATTGCGTCATTGAAGGCACCGTGGACTTCATCTTCGGGAAGGCAACGGCCCTGTATTTGAACACTGAGCTGAAAGTGCTGGGAGAAGGGGGATTGGGAGTGATTGCAGCGCATTCAAGAGAAAAGGAGGACGACCCCAGTGGGTATGTGTTTGCGCATTGCAGCATTACAGGCACGGGCGGGCCAAACACTTATTTGGCAAGATCCTGGAGGCCTTGGTCCAGAGTTGTGTTTGCCTACACCACCATTGCCGACATCCTTCATCCTGAAGGCTGGGACGACATGAACAACCCTTCTTTTGACAAGACTGTTTTCTTTGGAGAATATAAGTGTTCGGGGCCGGGAGCGGAGACGAGCAAGCGTGTAAAATTCAGCAAACAGCTGACTGAAGCACAAGTGAAACCCTTCATCAACCTTGATTACGTGGAGGCCAAAAAGTGGCTGCTTCCTCCTCCCAAACTATAG 1083 50.05 MNIALTTLLIFLAAFAPISSATTEVPAEKSQLEAWFSGHVKPLADRKAELDPALVAAEESSTVVKVRADGSGDFKTVTEAIASVPAGNTKRVVIWIGEGVYKEKLTIERNKPFITLYGSPKNMPKLTFDGDNKKYGTVYSGTLTVESEYFVAANLVIENTSPRPHAGKGGPALAARIRGNKATIYNCKFIGFQDTLCDDDGMHVYKDCVIEGTVDFIFGKATALYLNTELKVLGEGGLGVIAAHSREKEDDPSGYVFAHCSITGTGGPNTYLARSWRPWSRVVFAYTTIADILHPEGWDDMNNPSFDKTVFFGEYKCSGPGAETSKRVKFSKQLTEAQVKPFINLDYVEAKKWLLPPPKL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 726122 727276 + CmoCh20G001490.1 Cmo20g00149 404466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00149 360 SUPERFAMILY Pectin lyase-like 60 354 IPR011050 -
Cmo20g00149 360 PANTHER PECTINESTERASE 63-RELATED 29 355 - -
Cmo20g00149 360 Gene3D - 57 356 IPR012334 -
Cmo20g00149 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 355 - -
Cmo20g00149 360 Pfam Pectinesterase 64 348 IPR000070 GO:0030599|GO:0042545
Cmo20g00149 360 ProSitePatterns Pectinesterase signature 2. 210 219 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00146 Cmo-Chr20:719470 Cmo20g00149 Cmo-Chr20:726122 6.49E-166 dispersed
Cmo20g00149 Cmo-Chr20:726122 Cmo20g01092 Cmo-Chr20:10397241 0 dispersed
Cmo20g00147 Cmo-Chr20:720335 Cmo20g00149 Cmo-Chr20:726122 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00149 K01051 - csv:101205095 515.383