Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00164 | ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCCAATTCTGACGGAACTCACACTCTTTACCTTATGAACCCAAACTACGTACCTTACTCTGACACCCACTCTCAAACGCCACCCAATATGCTCTTTCTCAACCCTTCTGGACACGCGCTTAACCCTTCCACTCTCCCTCACGCGCCGCCTTCTAACAACCACTTCGTCGGAATTCCACTCTCCACCACCGACGCTCCACGTTCATCCTACGCTTCTCAATCCCATCACGAAATCGCAGCCCTCCATCCTATGCCATCTCAGCGTCTCCACTACAATCTATGGGCTCCTATGGATCAACAAACCCACCACGGAATCTCCACCGTGTCGGCCACCACCGACTCTACCGATTTGTGCTTCCGCCGTCCGACGACACAACAGGGTTTGTCCTTGAGCCTCTCTTCCCAACAGTCGCTTTACCGGACGCTATCAGCGGAACAGGAGATTCAAGGAGGCGGCGGCGCTCCGGCAATCTCGCCGACGAGTGGGGATGATATTCGGGTGTCGGGAAATTCGCCGACGTCGGTGTCGGTGGTGTCAAGTGGAATTACGGGGGTTCAAAGTGTGATATTGGGATCCAAATACTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTGGTTAATGTTGGGAAAGGAAATTATAAAACCGACAAAGGGGATGGTACAAAGGACAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGGAGGAGAGCCCTCCGGCGGTGGTGAAACCACTTCCAAGCCCGCCGCCGAGCTTAGCACTGCTCAAAGACAAGACCTTCAGATGAAGAAAGCTAAGCTTATTGGAATGCTTGATGAGGTGGAGCAAAAGTACAGACAGTACCACCAGCAAATGCAAGCAGTGGTGAATTGCTTCGAGCAGGCGGCAGGGTTGGGGTCAGCCAAGTCCTACGCCTCCCTCGCACTCGAAACCATTTCAAAGCAATTCCGGTGCTTAAAAGACGCAATATGTGCACAAATTAAAGCCACGAGCAAAAGCTTGGGCGAAGAGGATTGGTTGGGTGCCAAAATTGAAGGGTCAAGATTGAGATACGTGGACCATCATCTACGCCAACAAAGAGCTTTACAACAATTGGGTATGATTCAACACAACACTTGGAGACCCCAAAGAGGCTTGCCCGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCATTTCCTTCACCCGTATCCAAAAGATTCAGACAAGATTATCCTCGCAAAACAAACGGGACTCACAAGGAGCCAAGTATCTAATTGGTTCATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAGGAAATGTACTTGGAGGAAATCAAAGAGCAAGAACAAAACGGGGATTCCCACGACATGCTTAGAACCAACAAAAACGAACCCAACAAGCAACATGGCGGCGGCGGCGGAGGAGGAGGAGATCAGATTAATAACAACAATATTAAGGATGATCATGCACAGTCCAAGACAGAAAATTTGATGAACAATCAAAACAATATCCATGCAAGTCCCAAGAAACAAAGAACAACGACCGCCGCAAACAACAACCTGGAAACCCCATCCACAAAAACCATGCTTTTAAGGGATATCGACACAACAAAACACCTTCTTCAAACCACGGCAGAGATGAACATGAATCATCATCACTATCATGGGGGAGGGGGAGGATTTGGTGCGTACCCAGTTGGTGAAATTGGAACAAGGTTCAATTCCGAGCTCCTCACACCACGTTTCCATGGAAATGGCGTCTCTCTCACTCTTGGCCTTCCACATTCGGACACCCAACACAATTACCACTTGGGGAGAAGGCTTGATATCACCAATGGAGGAGGGCCCGATTTCTCCGACATCAATCCCGCTCCGCCCCCTCCCCCGCCGCCTCATTCTGCCTCGACCGCCTACGACCATGTCGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTATTGCCTGATTTTGTGGCTTGA | 2013 | 49.63 | MATYFHGGSEIQANSDGTHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSGHALNPSTLPHAPPSNNHFVGIPLSTTDAPRSSYASQSHHEIAALHPMPSQRLHYNLWAPMDQQTHHGISTVSATTDSTDLCFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGAPAISPTSGDDIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVNVGKGNYKTDKGDGTKDKMKMKKESTAAIGGEPSGGGETTSKPAAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVVNCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATSKSLGEEDWLGAKIEGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSHDMLRTNKNEPNKQHGGGGGGGGDQINNNNIKDDHAQSKTENLMNNQNNIHASPKKQRTTTAANNNLETPSTKTMLLRDIDTTKHLLQTTAEMNMNHHHYHGGGGGFGAYPVGEIGTRFNSELLTPRFHGNGVSLTLGLPHSDTQHNYHLGRRLDITNGGGPDFSDINPAPPPPPPPHSASTAYDHVEMQTTKRFAAQLLPDFVA | 670 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 823761 | 827431 | - | CmoCh20G001640.1 | Cmo20g00164 | 404481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00164 | 670 | Pfam | Homeobox KN domain | 403 | 442 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo20g00164 | 670 | SUPERFAMILY | Homeodomain-like | 387 | 452 | IPR009057 | - | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 159 | 184 | - | - | |
Cmo20g00164 | 670 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 5 | 6 | 624 | - | - | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 458 | 474 | - | - | |
Cmo20g00164 | 670 | ProSiteProfiles | 'Homeobox' domain profile. | 383 | 446 | IPR001356 | GO:0003677 | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 228 | 243 | - | - | |
Cmo20g00164 | 670 | SMART | prehox3 | 195 | 338 | IPR006563 | - | |
Cmo20g00164 | 670 | Coils | Coil | 270 | 297 | - | - | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 458 | 497 | - | - | |
Cmo20g00164 | 670 | Gene3D | - | 389 | 467 | - | - | |
Cmo20g00164 | 670 | CDD | homeodomain | 386 | 447 | IPR001356 | GO:0003677 | |
Cmo20g00164 | 670 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 6 | 624 | - | - | |
Cmo20g00164 | 670 | SMART | HOX_1 | 386 | 450 | IPR001356 | GO:0003677 | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 228 | 269 | - | - | |
Cmo20g00164 | 670 | Pfam | Associated with HOX | 200 | 336 | IPR006563 | - | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 514 | 537 | - | - | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 631 | 645 | - | - | |
Cmo20g00164 | 670 | MobiDBLite | consensus disorder prediction | 620 | 647 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo20g00164 | Cmo-Chr20:823761 | Cmo20g00834 | Cmo-Chr20:4158381 | 1.34E-91 | dispersed | |
Cmo02g01345 | Cmo-Chr2:8012929 | Cmo20g00164 | Cmo-Chr20:823761 | 0 | wgd | |
Cmo20g00164 | Cmo-Chr20:823761 | Cmo06g00525 | Cmo-Chr6:2534813 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11696 | PF07526 | POX | 9.00E-48 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00164 | - | - | cmax:111490715 | 862.062 |