Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00164 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCCAATTCTGACGGAACTCACACTCTTTACCTTATGAACCCAAACTACGTACCTTACTCTGACACCCACTCTCAAACGCCACCCAATATGCTCTTTCTCAACCCTTCTGGACACGCGCTTAACCCTTCCACTCTCCCTCACGCGCCGCCTTCTAACAACCACTTCGTCGGAATTCCACTCTCCACCACCGACGCTCCACGTTCATCCTACGCTTCTCAATCCCATCACGAAATCGCAGCCCTCCATCCTATGCCATCTCAGCGTCTCCACTACAATCTATGGGCTCCTATGGATCAACAAACCCACCACGGAATCTCCACCGTGTCGGCCACCACCGACTCTACCGATTTGTGCTTCCGCCGTCCGACGACACAACAGGGTTTGTCCTTGAGCCTCTCTTCCCAACAGTCGCTTTACCGGACGCTATCAGCGGAACAGGAGATTCAAGGAGGCGGCGGCGCTCCGGCAATCTCGCCGACGAGTGGGGATGATATTCGGGTGTCGGGAAATTCGCCGACGTCGGTGTCGGTGGTGTCAAGTGGAATTACGGGGGTTCAAAGTGTGATATTGGGATCCAAATACTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTGGTTAATGTTGGGAAAGGAAATTATAAAACCGACAAAGGGGATGGTACAAAGGACAAGATGAAGATGAAGAAAGAATCAACGGCTGCGATTGGAGGAGAGCCCTCCGGCGGTGGTGAAACCACTTCCAAGCCCGCCGCCGAGCTTAGCACTGCTCAAAGACAAGACCTTCAGATGAAGAAAGCTAAGCTTATTGGAATGCTTGATGAGGTGGAGCAAAAGTACAGACAGTACCACCAGCAAATGCAAGCAGTGGTGAATTGCTTCGAGCAGGCGGCAGGGTTGGGGTCAGCCAAGTCCTACGCCTCCCTCGCACTCGAAACCATTTCAAAGCAATTCCGGTGCTTAAAAGACGCAATATGTGCACAAATTAAAGCCACGAGCAAAAGCTTGGGCGAAGAGGATTGGTTGGGTGCCAAAATTGAAGGGTCAAGATTGAGATACGTGGACCATCATCTACGCCAACAAAGAGCTTTACAACAATTGGGTATGATTCAACACAACACTTGGAGACCCCAAAGAGGCTTGCCCGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCATTTCCTTCACCCGTATCCAAAAGATTCAGACAAGATTATCCTCGCAAAACAAACGGGACTCACAAGGAGCCAAGTATCTAATTGGTTCATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAGGAAATGTACTTGGAGGAAATCAAAGAGCAAGAACAAAACGGGGATTCCCACGACATGCTTAGAACCAACAAAAACGAACCCAACAAGCAACATGGCGGCGGCGGCGGAGGAGGAGGAGATCAGATTAATAACAACAATATTAAGGATGATCATGCACAGTCCAAGACAGAAAATTTGATGAACAATCAAAACAATATCCATGCAAGTCCCAAGAAACAAAGAACAACGACCGCCGCAAACAACAACCTGGAAACCCCATCCACAAAAACCATGCTTTTAAGGGATATCGACACAACAAAACACCTTCTTCAAACCACGGCAGAGATGAACATGAATCATCATCACTATCATGGGGGAGGGGGAGGATTTGGTGCGTACCCAGTTGGTGAAATTGGAACAAGGTTCAATTCCGAGCTCCTCACACCACGTTTCCATGGAAATGGCGTCTCTCTCACTCTTGGCCTTCCACATTCGGACACCCAACACAATTACCACTTGGGGAGAAGGCTTGATATCACCAATGGAGGAGGGCCCGATTTCTCCGACATCAATCCCGCTCCGCCCCCTCCCCCGCCGCCTCATTCTGCCTCGACCGCCTACGACCATGTCGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTATTGCCTGATTTTGTGGCTTGA 2013 49.63 MATYFHGGSEIQANSDGTHTLYLMNPNYVPYSDTHSQTPPNMLFLNPSGHALNPSTLPHAPPSNNHFVGIPLSTTDAPRSSYASQSHHEIAALHPMPSQRLHYNLWAPMDQQTHHGISTVSATTDSTDLCFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGAPAISPTSGDDIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVNVGKGNYKTDKGDGTKDKMKMKKESTAAIGGEPSGGGETTSKPAAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQAVVNCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATSKSLGEEDWLGAKIEGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSHDMLRTNKNEPNKQHGGGGGGGGDQINNNNIKDDHAQSKTENLMNNQNNIHASPKKQRTTTAANNNLETPSTKTMLLRDIDTTKHLLQTTAEMNMNHHHYHGGGGGFGAYPVGEIGTRFNSELLTPRFHGNGVSLTLGLPHSDTQHNYHLGRRLDITNGGGPDFSDINPAPPPPPPPHSASTAYDHVEMQTTKRFAAQLLPDFVA 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 823761 827431 - CmoCh20G001640.1 Cmo20g00164 404481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00164 670 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Cmo20g00164 670 SUPERFAMILY Homeodomain-like 387 452 IPR009057 -
Cmo20g00164 670 MobiDBLite consensus disorder prediction 159 184 - -
Cmo20g00164 670 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 624 - -
Cmo20g00164 670 MobiDBLite consensus disorder prediction 458 474 - -
Cmo20g00164 670 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Cmo20g00164 670 MobiDBLite consensus disorder prediction 228 243 - -
Cmo20g00164 670 SMART prehox3 195 338 IPR006563 -
Cmo20g00164 670 Coils Coil 270 297 - -
Cmo20g00164 670 MobiDBLite consensus disorder prediction 458 497 - -
Cmo20g00164 670 Gene3D - 389 467 - -
Cmo20g00164 670 CDD homeodomain 386 447 IPR001356 GO:0003677
Cmo20g00164 670 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 624 - -
Cmo20g00164 670 SMART HOX_1 386 450 IPR001356 GO:0003677
Cmo20g00164 670 MobiDBLite consensus disorder prediction 228 269 - -
Cmo20g00164 670 Pfam Associated with HOX 200 336 IPR006563 -
Cmo20g00164 670 MobiDBLite consensus disorder prediction 514 537 - -
Cmo20g00164 670 MobiDBLite consensus disorder prediction 631 645 - -
Cmo20g00164 670 MobiDBLite consensus disorder prediction 620 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00164 Cmo-Chr20:823761 Cmo20g00834 Cmo-Chr20:4158381 1.34E-91 dispersed
Cmo02g01345 Cmo-Chr2:8012929 Cmo20g00164 Cmo-Chr20:823761 0 wgd
Cmo20g00164 Cmo-Chr20:823761 Cmo06g00525 Cmo-Chr6:2534813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11696 PF07526 POX 9.00E-48 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00164 - - cmax:111490715 862.062