Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00168 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTTCCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTCTCTTCTATGAAACCGCCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCCATCGTAGTCAGATCTCCGCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGACTCAACCGATAGAGCAGCTGGTCCTAGATTTTCTGAGGTAGCTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTTACTAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAACGTTGGTTCACCTTCTGCCAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTAACAAAGAAGTTTATTAACCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTCAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGTTACATGTGCAGGCTGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGCAATAG 789 46.39 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAIVVRSPQLKRKSEVADYEADSTDRAAGPRFSEVANSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQLHVQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRQ 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 850643 855088 + CmoCh20G001680.1 Cmo20g00168 404485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00168 262 MobiDBLite consensus disorder prediction 60 81 - -
Cmo20g00168 262 SUPERFAMILY E2F-DP heterodimerization region 224 261 IPR037241 -
Cmo20g00168 262 PANTHER TRANSCRIPTION FACTOR E2FB 18 261 - -
Cmo20g00168 262 MobiDBLite consensus disorder prediction 1 15 - -
Cmo20g00168 262 MobiDBLite consensus disorder prediction 60 135 - -
Cmo20g00168 262 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cmo20g00168 262 Gene3D - 134 207 IPR036388 -
Cmo20g00168 262 Coils Coil 229 262 - -
Cmo20g00168 262 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cmo20g00168 262 MobiDBLite consensus disorder prediction 1 46 - -
Cmo20g00168 262 Coils Coil 156 176 - -
Cmo20g00168 262 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cmo20g00168 262 Gene3D - 220 262 - -
Cmo20g00168 262 MobiDBLite consensus disorder prediction 109 135 - -
Cmo20g00168 262 PANTHER TRANSCRIPTION FACTOR E2F 18 261 IPR015633 GO:0000978|GO:0006357
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01350 Cmo20g00168 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01117 Cmo-Chr3:8970606 Cmo20g00168 Cmo-Chr20:850643 2.03E-77 dispersed
Cmo07g00858 Cmo-Chr7:4049258 Cmo20g00168 Cmo-Chr20:850643 9.32E-77 dispersed
Cmo10g00164 Cmo-Chr10:743630 Cmo20g00168 Cmo-Chr20:850643 8.13E-11 dispersed
Cmo12g00363 Cmo-Chr12:2246647 Cmo20g00168 Cmo-Chr20:850643 2.07E-44 dispersed
Cmo02g01350 Cmo-Chr2:8036553 Cmo20g00168 Cmo-Chr20:850643 6.74E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11697 PF02319 E2F_TDP 4.90E-26 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00168 K06620 - csv:101219318 477.633