Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00181 ATGGCGGAAGAACATCGATGCCAAGCGCCGAAGCTCTGCGTTAATAACTGCGGATTCTTTGGGAGTCCGGCGACTCGAGATCTTTGTTCGAAGTGCTACCGAGATCTGCAGATGAAGGAACAACAATCTTCCTCCGCCAAGCTCGCGCTAAACCAAACCCTAACATCCGCCGTTACGTCATCCTCGTTCGCGGATGCCGCTTTGTTAGATCTGAAACCGGCTTCAACAGAAGCGAACCAGCCGCTGGCGGAGGTGGCAGAGAAGGCGCAGACGAGGACGGAAGTGGCGCCAGCACCGGCACAGCAGCAGCCGAGCCGGTGTATGACGTGCAGGCGGCGCGTGGGATTGACAGGGTTTAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGGTGTGAATTTGACTTCAAGCAGATGGGGAAGGATCAGATCGCAAAAGCGAATCCGGTGGTGAAAGGAGAGAAACTGCAGAAGATCTGA 501 56.29 MAEEHRCQAPKLCVNNCGFFGSPATRDLCSKCYRDLQMKEQQSSSAKLALNQTLTSAVTSSSFADAALLDLKPASTEANQPLAEVAEKAQTRTEVAPAPAQQQPSRCMTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKQMGKDQIAKANPVVKGEKLQKI 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 902855 903355 + CmoCh20G001810.1 Cmo20g00181 404498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00181 166 SUPERFAMILY AN1-like Zinc finger 92 161 IPR035896 -
Cmo20g00181 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Cmo20g00181 166 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Cmo20g00181 166 Gene3D - 80 162 IPR035896 -
Cmo20g00181 166 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Cmo20g00181 166 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Cmo20g00181 166 Pfam AN1-like Zinc finger 107 143 IPR000058 GO:0008270
Cmo20g00181 166 Gene3D - 1 60 - -
Cmo20g00181 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Cmo20g00181 166 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 166 - -
Cmo20g00181 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Cmo20g00181 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01153 Cmo-Chr3:9136836 Cmo20g00181 Cmo-Chr20:902855 7.76E-24 dispersed
Cmo07g00890 Cmo-Chr7:4210165 Cmo20g00181 Cmo-Chr20:902855 5.70E-62 dispersed
Cmo15g01238 Cmo-Chr15:8528156 Cmo20g00181 Cmo-Chr20:902855 7.67E-43 dispersed
Cmo17g00921 Cmo-Chr17:8235913 Cmo20g00181 Cmo-Chr20:902855 1.56E-44 dispersed
Cmo20g00078 Cmo-Chr20:406152 Cmo20g00181 Cmo-Chr20:902855 2.48E-22 dispersed
Cmo02g01365 Cmo-Chr2:8107913 Cmo20g00181 Cmo-Chr20:902855 3.46E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00181 - - csv:101219115 251.521