Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00186 ATGGCGAGCAACAGAGTGGAAGAAACCGCCCCTGCTTCAACCCATCACCATCCTCACAATTCACATCTTTATGCAATCAACTACAACAATCCCTCCTCCACTTGCGAAGCTTTTGATATTGGAGAATTGGAACAAGCAATTGTGTTACAAGAACACGAAGCTAAGAACAAACTCAATCATCACCAATCCAAACAAACCTTTTTCTCAGGCAGGCCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCCACAGGAATGAGTTCGAGACGAAGAGAAGAGAGCACTGATGAATCTCCCATGACTAAAAAGCCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCATCAGGGCTTTACTCAGAAGCAGATTCACCCTGAAATGATACTCACTGATGTTTCAGCTCAACATCACTCCCTTCAACAAAAGAGAAAAGGATGTGGTTCGATTTCAACATCACAGAAGCAACTTGATGCTAAGACATTGAGACGTTTAGCTCAGAATAGGGAGGCTGCCAGGAAGAGTCGCCTAAGGAAAAAGGCTTACGTACAGCAACTTGAGAGCAGTAGAATCAAGCTCACTCAGCTTGAACAAGACCTTCAACGGGCACGAGCTCAGGGTTTGTTTCTTGGTGCCTGCGGTGGTGGCGGCGGCATTATCAGCCCAGGAGGTGCAATGTTTGACATGGAATATGCAAGGTGGTTGGACGAGGACCACCGGCACACGGCGGAGCTGCGCGGGGGACTGGAGGCACGCCTACCGGACGTGGAGCTGAGAGTGAAAGTAGACGCATGCATTTTCCATTACGACCAAATTTTCCGGCTGAAAGGAGAGGCTGCTAAGTCCGACATCTTCCATCTCATCGCCGGCATCTGGATGTCTCCGGCCGAGCGTTGCTTCCTTTGGATTGGTGGATTCCGGCCCTCCGATCTCATCAAGATTTTGCTGTCACAATTGGACCCAATCACAGAACACCAAGTGGTGGAAATTTACAAGCTACAGCATTCGTCACAGCAGGCTGAAGATGCTTTATCTCAAGGCCTTGATCAGCTCCATCAGTCTTTGACGGACACCGTAGCCGGCGGTCCGGTCATCGACGGCATCAACCACATGGTTCTGGCCATGGACAAGATCTCTCATCTCCAAGGCTTTCTCCATCAGGCGGATATTTTAAGACAACAAACGCTTCACCAATTGCATAGGATGCTCACCGTCCGACAAGCAGCCAGATGTTTTATAGTTATTAGTGAATATTACACTAGATTACGAGCCCTAAGCTCCATATGGTCCTCTCGTCCAAAGGACTAA 1350 48.67 MASNRVEETAPASTHHHPHNSHLYAINYNNPSSTCEAFDIGELEQAIVLQEHEAKNKLNHHQSKQTFFSGRPAAAAAAAAAAATLEMFPSWPIKFQQTPTGMSSRRREESTDESPMTKKPSSSSSSSSAHQGFTQKQIHPEMILTDVSAQHHSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARAQGLFLGACGGGGGIISPGGAMFDMEYARWLDEDHRHTAELRGGLEARLPDVELRVKVDACIFHYDQIFRLKGEAAKSDIFHLIAGIWMSPAERCFLWIGGFRPSDLIKILLSQLDPITEHQVVEIYKLQHSSQQAEDALSQGLDQLHQSLTDTVAGGPVIDGINHMVLAMDKISHLQGFLHQADILRQQTLHQLHRMLTVRQAARCFIVISEYYTRLRALSSIWSSRPKD 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 917989 921540 - CmoCh20G001860.1 Cmo20g00186 404503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00186 449 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
Cmo20g00186 449 Coils Coil 193 220 - -
Cmo20g00186 449 ProSiteProfiles DOG1 domain profile. 238 446 IPR025422 GO:0006351|GO:0043565
Cmo20g00186 449 MobiDBLite consensus disorder prediction 94 134 - -
Cmo20g00186 449 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
Cmo20g00186 449 Pfam bZIP transcription factor 173 215 IPR004827 GO:0003700|GO:0006355
Cmo20g00186 449 Gene3D - 173 222 - -
Cmo20g00186 449 MobiDBLite consensus disorder prediction 1 21 - -
Cmo20g00186 449 SMART brlzneu 170 225 IPR004827 GO:0003700|GO:0006355
Cmo20g00186 449 PANTHER TRANSCRIPTION FACTOR TGA9 74 449 - -
Cmo20g00186 449 MobiDBLite consensus disorder prediction 116 134 - -
Cmo20g00186 449 Pfam Seed dormancy control 256 330 IPR025422 GO:0006351|GO:0043565
Cmo20g00186 449 PANTHER TRANSCRIPTION FACTOR TGA9 74 449 - -
Cmo20g00186 449 MobiDBLite consensus disorder prediction 149 175 - -
Cmo20g00186 449 SUPERFAMILY Leucine zipper domain 174 216 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00663 Cmo-Chr18:8459117 Cmo20g00186 Cmo-Chr20:917989 9.69E-138 dispersed
Cmo20g00186 Cmo-Chr20:917989 Cmo06g00021 Cmo-Chr6:139954 1.07E-118 dispersed
Cmo20g00186 Cmo-Chr20:917989 Cmo06g00079 Cmo-Chr6:475401 2.78E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11700 PF14144 DOG1 1.60E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00186 K14431 - csv:101223216 553.518