Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00198 ATGGAGTCTTCTCCGGACGACATCGCCGACGACCTCCAGAGCCTCAGCTTCAATTCCACCAACACCAACCGCAGCATCAGCTCCGGCTCCGAGACTACTCTCACCGCCTCCTCCTCATCCGTACACATCCCTTCTATTCTCAACAAGCCCCACGCGCCTTCTTCCGACCCTTGCTGGTCTGCCGTTAACCGGATCCGATCCGACTCGTCGTCTCGCCAACTCGCCTTCTCTGACCTTAAGTTCTTCAACCGCCTCGGTTCCGGCGACATTGGCTCCGTCTACCTCGCTGGCCTCAAGTCCACTGGAGCCGACGGATGCCTGTTCGCGGCGAAGGTAATGGATAAGAAGGAACTGGCGAGTCGGAGTAAAGAAGGCAGAGCAAGGACTGAGAGGGAGATTTTGGAGTCTTTAGACCATCCGTTTCTTCCGGCACTCTATGCTAGTATCGACTCGCCTAAGTGGCTCTGTCTCTTGACGGAGTTCTGTCCCGGTGGTGACCTTCATGTTCTCCGGCAACGGCAGCCTAACAAACGATTCGATGAACTCGCCGTAAGATTCTATGCATCTGAGATTGTGGTTGCTATCGAGTATCTTCACATGATGGGGATCGTTTACCGTGATCTCAAGCCTGAAAATGTGCTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCAACGGCGACCCCACAGGTTATCAATGGTAAAAATCCGACAAATGGCACCGCCCTGCCAAAGGACTACCAAATTGATGCCCCTCCTTTTGCATCATCCTCCTGCATACTTCCAAACTGTATAGTCCCCGCCGTGTCATGTTTCAACCCAAAACGCAAGCGGAAGAAGAAGTCTGGTCGCCGCAATGGACCTGAGTTTGTTGCTGAACCGGTCGACGTCCGGTCGATGTCATTTGTTGGCACCCACGAGTACTTGGCACCGGAGATTGTCTCCGGTGAGGGCCATGGAAGCGCAGTGGACTGGTGGACTCTAGGGGTGTTTGTGTTTGAGTTGTTTTACGGGGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAATATAGTGGCCAGAGCCCTTGAGTTTCCTAAAGAACCGGCAGTGCCAGTGGCGGCAAAGGACCTCATTTCCCAGTTACTGGTCAAAGACCCGGCGAGGCGGCTGGGGTCAACGACAGGGTCGTCGGTGATCAAGCACCATTCATTTTTCCAAGGGGTGAATTGGGCATTATTGAGATGTACTACGCCACCATTTATTCCCCCACCATTTAGTAGAGAAAAAGTTGCATTGGATGAAAGCTGCCCTGTGGCCCCAATCGAGTATTATTAG 1356 52.88 MESSPDDIADDLQSLSFNSTNTNRSISSGSETTLTASSSSVHIPSILNKPHAPSSDPCWSAVNRIRSDSSSRQLAFSDLKFFNRLGSGDIGSVYLAGLKSTGADGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPALYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINGKNPTNGTALPKDYQIDAPPFASSSCILPNCIVPAVSCFNPKRKRKKKSGRRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPVAAKDLISQLLVKDPARRLGSTTGSSVIKHHSFFQGVNWALLRCTTPPFIPPPFSREKVALDESCPVAPIEYY 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 969271 974220 - CmoCh20G001980.1 Cmo20g00198 404515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00198 451 Gene3D Phosphorylase Kinase; domain 1 78 165 - -
Cmo20g00198 451 SMART serkin_6 79 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00198 451 ProSiteProfiles Protein kinase domain profile. 79 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00198 451 Gene3D Transferase(Phosphotransferase) domain 1 166 239 - -
Cmo20g00198 451 Gene3D Transferase(Phosphotransferase) domain 1 308 430 - -
Cmo20g00198 451 Pfam Protein kinase domain 309 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00198 451 Pfam Protein kinase domain 82 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00198 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Cmo20g00198 451 PANTHER FLIPPASE KINASE 1-RELATED 3 451 - -
Cmo20g00198 451 SUPERFAMILY Protein kinase-like (PK-like) 57 435 IPR011009 -
Cmo20g00198 451 PANTHER OS11G0150700 PROTEIN 3 451 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01376 Cmo20g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00198 Cmo-Chr20:969271 Cmo03g00624 Cmo-Chr3:5785792 8.29E-148 dispersed
Cmo20g00198 Cmo-Chr20:969271 Cmo20g00200 Cmo-Chr20:979509 6.05E-138 proximal
Cmo02g01376 Cmo-Chr2:8174219 Cmo20g00198 Cmo-Chr20:969271 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75133 PF00069 Pkinase 1.80E-34 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00198 K08286 - csv:101207262 852.432