Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00200 ATGACTACGTTAGCCAGTACTTCTGAAATTGTTGAATCAACAGAAGAAATTGATGCCGAGAAAGCTGGTACGAGTTACATGCTAGATGTTGGAAAAAGGTTTTCTATAGAGGATGACATTAACCATCTGTTTCAGGCAATTGATATCAGAACCTTACGTAAGAGGGCTGGGCAGCAACGTGAAGTTGATAAAGATGCCTTGCGAAAGAGTGCGATGAAAAGACCGGTTAGAGTAGGTTCATCTCACATGGCAGGGATAGGAATTTCTGAACCTGCAAGTTTGAAGCAGGCTTTGAGAGGCTTATGCATATCTCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTTGGTAGGTTCACCCAGAATCTCTGAAGCAGGAACTATCAAGAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATCTGGTGTTCCTGTAAATGAAAGCAGAGCAAATTTGGTAGAAATTTCCATTGTTTCAGAAAGAATCATGTCAACTTCTCAAAATAAGATGCCTGAGTCGTTACATAAAACTCAGACAGATATATCAAACCAAGGAGCCGAGTCTTCTTCTTTCAAGGATACTGGGGTATCAGAAGAGGCGAGTGTGGATAGAGTGATGTCGAAGGATCTTGTAGTTAATATGGCTACTGAGGCGACGAGTTTAAAGGCACCTGGTGAAGTGGAAAATCTTAAATCTCCTTCCCTTACTCCTACTGGTGAGAAGGATCTGGCTATTTCCTCAACTGAAGATTTGACAAAAGATTCAGTACCGAAGAAGGAGGAGAGAGGTACAATGCGTTGTTTATCTTCTCTATCAAGCTCGGGATCTGTTGTCAAGCTGAACAAATCAGCTTTCAATAATACACGTTTCATCAAACCTATTTTCAGGTCCAAGAGTTTTGTCAAGAAGAAAGCAAAACTTGAGCCAAATTCCTCCCCTAGCGTTTTCGATGGGTGCACAGAAAAGCTCGACACTGATTTGGGTCCCATAGCAGAAAAATCTGAGAACCAAATGCCAGAAAATGCACAGCATCATGAGAGTAAAGAAGAAGATAAAGGTTATTCTGTCTCTAGTAGCATAACATTAGGTACTGAAGTAAATGGAAATGTAGTAAGCACAGAATCTAGTAGACCTGGTACATCTCTCAACTGCTGTAACAGGAACAGACCAACTATTATGCCATTCGATGAGAGATCCAGATCGAGAGAAAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTATTGGCGAATGTAGTAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTTAGTGGATCGAGTCGTAGTGGAGTTAGGCCTCACATGTCAAAGGATTTGAAATGGGAAGCAATCCTCCACCTTCAGGATCAACATAAATTCCTAGGTCTGAGAAATTTCAAGCTGCTAAGGAGACTTGGTCTCGGGGACATTGGGACCGTGTATCTTTCTGAGCTGTGCGGTTCAAGCTGTCTATTTGCTATTAAAGTGATGGACAAGGAGTTCTTGGCAAGCAGGAAAAAAATACTTCGGGCACAAACTGAGAGAGAGATACTGCAAATGCTCGACCATCCATTTCTTCCTACATTATATGCCCATTTTGAGACGGATAAGCACTCATGCTTGGTCATGGACTACTGTCCTGGTGGAGATCTCCATGTGCTGCGACAGAAGCAACCATGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAGTACTTACATATGCTAGGAGTTGTTTACCGTGACCTGAAACCCGAGAATGTTCTGGTTCGAGAAGATGGGCACATCATGCTCACGGATTTTGATTTGTCTCTTAGATGTTCTTTTAACCCAACGTTGCTTCAATCATCATCTCCAGTTGTGGAATCCACTAAGAGGACTCTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTCTCATGCTTCACTCCCAAAGTTGTATCTGCTCCATACAAATCCCGGAGAACGAAAACAGATCATAACGCTGGTCTATTACCGCAGCTTATTGTCGAACCAACTGGTGCGCGGTCCAATTCATTTGTAGGAACCCACGAATACCTTGCTCCTGAGATTGTCAAGGGTGATAGCCATGGGAGTGCTGTTGATTGGTGGACTTACGGGATTTTCCTGTTTGAGCTTCTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCGAACATAGTATCCCAACCTCTCAAGTTCCCCGATTGCCCTATAGTTAGTTTTCATGCAAGAGACCTGATTAGATGTCTGCTGGCAAAGGAACCCGAAAACCGATTAGGCTCAACAAAAGGGGCTATCGAGATTAAGCAGCATCCATTTTTTGAAGGCCTCAACTGGGCTCTGATACGTTGTGCAGCTCCCCCCGAGCTTCCTAAGTTTTTCGACGGTGGAACTGGTGCAATGCCAATGGATTCTGGGGAGAGTACAAAGCGTAGAGATCTCGAGAATATGGAAGCAGATGCAGCAATCTTTGACCTGTTTTAG 2565 43.9 MTTLASTSEIVESTEEIDAEKAGTSYMLDVGKRFSIEDDINHLFQAIDIRTLRKRAGQQREVDKDALRKSAMKRPVRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRLVGSPRISEAGTIKRLYRAVVVEANGSGVPVNESRANLVEISIVSERIMSTSQNKMPESLHKTQTDISNQGAESSSFKDTGVSEEASVDRVMSKDLVVNMATEATSLKAPGEVENLKSPSLTPTGEKDLAISSTEDLTKDSVPKKEERGTMRCLSSLSSSGSVVKLNKSAFNNTRFIKPIFRSKSFVKKKAKLEPNSSPSVFDGCTEKLDTDLGPIAEKSENQMPENAQHHESKEEDKGYSVSSSITLGTEVNGNVVSTESSRPGTSLNCCNRNRPTIMPFDERSRSREKGMFSQSSKSSIGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAILHLQDQHKFLGLRNFKLLRRLGLGDIGTVYLSELCGSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPCKSFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCSFNPTLLQSSSPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVVSAPYKSRRTKTDHNAGLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDSHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQPLKFPDCPIVSFHARDLIRCLLAKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCAAPPELPKFFDGGTGAMPMDSGESTKRRDLENMEADAAIFDLF 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 979509 982768 + CmoCh20G002000.1 Cmo20g00200 404517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00200 854 Pfam Protein kinase domain 698 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00200 854 Pfam Protein kinase domain 470 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00200 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Cmo20g00200 854 MobiDBLite consensus disorder prediction 234 248 - -
Cmo20g00200 854 MobiDBLite consensus disorder prediction 169 201 - -
Cmo20g00200 854 MobiDBLite consensus disorder prediction 337 441 - -
Cmo20g00200 854 MobiDBLite consensus disorder prediction 169 199 - -
Cmo20g00200 854 Gene3D Transferase(Phosphotransferase) domain 1 549 618 - -
Cmo20g00200 854 SMART serkin_6 469 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00200 854 MobiDBLite consensus disorder prediction 341 356 - -
Cmo20g00200 854 MobiDBLite consensus disorder prediction 409 441 - -
Cmo20g00200 854 MobiDBLite consensus disorder prediction 226 267 - -
Cmo20g00200 854 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 1 829 - -
Cmo20g00200 854 CDD STKc_phototropin_like 469 819 - -
Cmo20g00200 854 MobiDBLite consensus disorder prediction 249 267 - -
Cmo20g00200 854 ProSiteProfiles Protein kinase domain profile. 469 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00200 854 Gene3D Transferase(Phosphotransferase) domain 1 696 815 - -
Cmo20g00200 854 PANTHER FLIPPASE KINASE 1-RELATED 1 829 - -
Cmo20g00200 854 SUPERFAMILY Protein kinase-like (PK-like) 445 819 IPR011009 -
Cmo20g00200 854 MobiDBLite consensus disorder prediction 357 391 - -
Cmo20g00200 854 Gene3D Phosphorylase Kinase; domain 1 467 548 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01378 Cmo20g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01378 Cmo-Chr2:8182901 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo03g01161 Cmo-Chr3:9165435 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo07g00896 Cmo-Chr7:4259422 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo08g00236 Cmo-Chr8:1423015 Cmo20g00200 Cmo-Chr20:979509 1.04E-69 dispersed
Cmo18g00610 Cmo-Chr18:7402842 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo20g00200 Cmo-Chr20:979509 Cmo11g01662 Cmo-Chr11:11792207 1.89E-177 dispersed
Cmo20g00198 Cmo-Chr20:969271 Cmo20g00200 Cmo-Chr20:979509 6.05E-138 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75134 PF00069 Pkinase 6.50E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00200 - - cpep:111777395 1600.1