Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00212 ATGCAGACGCAAATGCATCTCCTCCTCCACTGCCGTGGTTTTCGGATCGTTAGAGCTTTGTTCTGTGCTGCGGCTGTGCTTGAGTGGTTCTCGGCGACGGCTCAGCTCCAACACCATGTGGCGGATCTACATTGGCTTCCAGCCACCGCCACGTGGTACGGAAGTCCCGAGGGAGACGGTAGCGACGGGTCTGTAAATTCATGGGTCGGCTCTGTTTTTGTGAAATACTGCCTGGAAGTTACCGTCATTGAGTCAATTCGCGATTTGAGCTGTGAAATCGCAGGTGGAGCATGTGGGTATGGTAATTCAGTGGATGTGAAGCCTCTAAAGGCAAGAGTTGGGGCTGTGAGTCCAGTTCTGTTCAGAAATGGCGAAGGTTGTGGAGCTTGTTACAAAGTAAAATGTTTAGACAACAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAATGCCCCGGTGGGTATTGTTCCAATGGCAACACCCACTTCGATCTGAGCGGCGCCGCCTTCGGCCGCATGGCCATCACCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTTATTTACAGACGGACGCCGTGTAAGTACCCAGGCAAGCACATTGCGTTCCATGTCAATGAAGGGTCGACAGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGACGGCGATGGCGACATCGGCGCAATGCAAATCAAAGAAGCAGGGTCGGCGGGGGAGTGGGTGGATATGAACCATCTGTGGGGGGCAAATTGGTGCATCATTGGAGGGCCTTTAAAGGGGCCATTCTCAGTGAGACTAACAACGTTGTCGACAGGAAGAAGCCTCTCAGCAAGGGATATAATCCCAAGGAACTGGTCTCCCAAAGCCACTTACACTTCCAGACTTAATTTCTTCTCTTAA 921 52.01 MQTQMHLLLHCRGFRIVRALFCAAAVLEWFSATAQLQHHVADLHWLPATATWYGSPEGDGSDGSVNSWVGSVFVKYCLEVTVIESIRDLSCEIAGGACGYGNSVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDNNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAITGEGGQLRNRGEIPVIYRRTPCKYPGKHIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKEAGSAGEWVDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRSLSARDIIPRNWSPKATYTSRLNFFS 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1024601 1026238 - CmoCh20G002120.1 Cmo20g00212 404529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00212 306 PANTHER EXPANSIN-B3 94 305 - -
Cmo20g00212 306 PANTHER EXPANSIN-B3 26 75 - -
Cmo20g00212 306 SUPERFAMILY PHL pollen allergen 205 300 IPR036749 -
Cmo20g00212 306 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 218 300 IPR007117 -
Cmo20g00212 306 SUPERFAMILY Barwin-like endoglucanases 94 204 IPR036908 -
Cmo20g00212 306 Gene3D - 31 201 IPR036908 -
Cmo20g00212 306 SMART dpbb_1 113 195 IPR007112 -
Cmo20g00212 306 Pfam Expansin C-terminal domain 207 289 IPR007117 -
Cmo20g00212 306 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Cmo20g00212 306 PRINTS Major pollen allergen Lol pI signature 276 293 IPR005795 GO:0005576|GO:0019953
Cmo20g00212 306 PRINTS Major pollen allergen Lol pI signature 225 240 IPR005795 GO:0005576|GO:0019953
Cmo20g00212 306 PRINTS Major pollen allergen Lol pI signature 209 224 IPR005795 GO:0005576|GO:0019953
Cmo20g00212 306 PRINTS Major pollen allergen Lol pI signature 115 126 IPR005795 GO:0005576|GO:0019953
Cmo20g00212 306 PRINTS Major pollen allergen Lol pI signature 155 170 IPR005795 GO:0005576|GO:0019953
Cmo20g00212 306 PANTHER EXPANSIN-LIKE PROTEIN B1 94 305 - -
Cmo20g00212 306 PANTHER EXPANSIN-LIKE PROTEIN B1 26 75 - -
Cmo20g00212 306 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 95 205 IPR007112 -
Cmo20g00212 306 Gene3D - 202 305 IPR036749 -
Cmo20g00212 306 Pfam Lytic transglycolase 115 194 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01949 Cmo20g00212 CCT
Cmo02g00105 Cmo20g00212 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02227 Cmo-Chr14:15798088 Cmo20g00212 Cmo-Chr20:1024601 2.41E-62 dispersed
Cmo20g00212 Cmo-Chr20:1024601 Cmo15g01247 Cmo-Chr15:8565520 4.69E-30 dispersed
Cmo11g01949 Cmo-Chr11:13441695 Cmo20g00212 Cmo-Chr20:1024601 1.05E-136 wgd
Cmo02g00105 Cmo-Chr2:562403 Cmo20g00212 Cmo-Chr20:1024601 1.62E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00212 K20628 - csv:101202998 497.664