Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00222 ATGAATGGAATTATAATTCTACGCTTGCGTCATGACCTATACGTCAAGACGCGAAACTCTCAAATCGGTATAAAACTACAAGCATTAACAGAAGACCATCAAGTATCACAATACAATCGAGAAGACCGTGCATCATCCAATACACTAAAAAGAATGTCTATGAAAGTCAAACTAAGGCATGAGCAAAGTTGGAGCTCAATTCAACCAGACAGAACACTCCGCCTCTCAAATCGCCTACGCTTTTCACGACTCATCTTCAAGGTTTTATTACCTTCTGCTGGTTTGAATGAAACACTTGACATTGTCTTGAATTTTGTTTTGTTTTTTGAGTTTGGGATTGGGGTTTATGTTTTACCGGATGAGTGTAGTGAACATGAACATGATAGCTCCAATAGAGCATATTCCTCCAGAAAACACCTCTCTGAATTGAAAATATCAAGAGCTGGCTTTCCCAAATCAGAGAAGATTTGGGAAAAAGATAGACTAGATTGTAGCGATGTTTCGGTTATGTTGTTCGATACGAAGGCGAACGGTCCTCTGCGCTCGCACGGTGAGCTTCCCAATGAGAGGAAGAAGAAGGCAGACGTCCCTGATATCACCATTGTCACTCATCCATGTATGGGAAAGATTCCGAATGTTACCGAAGCCGAGCAGATTGGCCAGGGAACTTATAGCAGTGTGTATAAAGCTCGTGATATCATTCAGGATAAAGTTGTGGCCTTGAAACGGATCAGGTTTGACAATCAAGACGCCGAGAGTATCGCGTTCATGGCTAGGGAAATCCTTGTTTTGCGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTCACATGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCATCTCGGCCTGGCACGTCGTTCACCGAACCACAGGTAGCATATATAGCTCATGAACATTATAATGGGGTTCTGCATAGAGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGTGTTTTGAAGATAGCAGATTTTGGGTTGGCTGTTTTCTATGATTCACAGTCGACGGTTCCCATGACGAGTCGTGTAATAACGCTCTGGTATCGACCACCGGAACTTTTACTTGGAGCATCTCAATATGGAGCTGAAGTTGACTTATGGAGTGCTGGTTGCATTCTAGGAGAGTTATATGCCGGCAAGCCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTACACAAAATATTCAAGCTATGTGGTTCCCCCTCCAAGGAATATTGGAGAAACTTGCATTTGAAGCATTCAACAAGCATGAAGCCTCCGCAGACGTACGAACGATGTCTTCGAGAAAGATATGACGACATTCCTCATGCTGCTATTGAGCTCATGGACAATTTGCTGTCTATAGATCCTGCAGAGCGAGGAACTGCAGCTTCCGCACTCGACAGCGAGTTCTTTAGCACAAGGCCCTTGCCATGCAATCCTTCAAGTTTGCCGAAACTCTTAGTTCTACGTTTTACACAGGCAACGAGGAGTAGGTGGCGGGAGAAGCCGAGCAGTCGACGCCGAACTAAAAGGACTGAAGCAATCTCGGCAGAAGATGTTATCTTGTCTCTTGATTCTCTAACCATCTTGTTGGCTGAACTTCTCCGGGCACGACACGGTCGGGCTTCGAAGCTCTTTGGATTGATTATGGCATCGTCTAGAGTCGAAAGGGAATTAGTTGGTTCATTAGGCAATCATTCCAAGCCACCACCGGTTCTGTTCTTTGAGCTAATGTATATAAGTTGGGATTTTGGAAGAACAATTGAAAACAAAACAGTTGAATCAAACAAAGCTTACTGTTTGTGGATGGTTTGTCGTCGACATGGGTTGAGAGATAGAGAGATAGAGAGAGAGTGGGAATTTTATAGTCGAACAGCCGGCACAGGCCGTCTTAATATGATAATCTTTGAAAATACATGTTTGAATACGCGTTCGGAATTCAAAAGGCGAGCTCAATGTTCTTTCTTGGTAACTAAGCGTCTCTATCTCTTTTTCATTCCATTTACTTCCGATTATCTATTTGGTCTTCTGATTGATGAAAGCGATTCGAAATATTCTGGACTAAGGGACTTTGGAAATTCGTTCCAGTTTTTTCTGATCAACAACTGTTTGGTGTTCAAACTCGCGTGTTTGAATCGTTGGCTTCAAGTGGAGATTGTAATTTCTGAAGAAACTTACGATTTTGTTGTTAGTTTCTGGGCTGCAATTATGGGTTGCCAATGTTCCAAGCCATCTGTTCATGAAGATGAACAGAGCAGAGCCTCTGAGAAATTGCCTTCACTAAAGGCTTCAGGGGTTAATTTTTCAAGGAAAGAGGAGGATGTGCAATTCAATTCCGTGAAGAGGGACCAAGGTGTTCGACTAAATGCCTCACAGAGAGCTGATGGTATTCGATCGAAGCTGAAACCAGAAGGTGGTGACTTGAAGGTTGCTTACTTAGATAAGAGGGTCAACGGCTCAAACAGGGTACATGATGATCAAATTGAGAAAAAGAAGAGGGAGAGGTTGGAAGCAGCCATTTCTGCTAATTATCCTGGTAAAGGAAGCATTCCAAAGGCTATGGAAGCTGAGCAAGTTGCAGCTGGTTGGCCTAGCTGGCTTTCCTCTGTGGCTGGTGAAGCGCTCGAGGGATGGCTGCCACGAAAAGCCGAAACGTTCGAGAAACTAGACAAGATAGGACAAGGAACATACAGTAGTGTTTACAAGGCTCGTGATATCATTCACGGTAAACTAGTCGCTCTAAAACGAGTTCGATTCGATAATCTTGATGTGGAGAGTGTGAAGTTTATGGCCCGGGAAATCCTTATCCTACGTAGACTTGATCATCCAAACGTTATAAAATTGGAAGGCTTGATTACGTCTCCACGATCATGTAGCTTGTACCTCATTTTTGAGTATATGGAGCACGATCTTACAGGGCTCGCATCTCGGCCCGGCGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTGCCACAGTCATGGTGTACTCCACCGCGATATAAAGGGTTCGAATCTCCTAATCAATGCCAATGGTATCTTGAAGATTGCAGATTTTGGACTAGCAAGCCATTTTGACCCTCATAATCATGTTCCCTTAACAAGTCGCGTAGTGACTCTATGGTACCGACCACCCGAACTTCTTCTTGGAGCTTCTCATTATGGTGTTGCAGTGGACCTGTGGAGTACTGGTTGCATACTAGCTGAGCTATATGCTGGGAAGCCCATCTTGCCTGGAAAAACAGAGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGGTCGCCACCCGAGAATTATTGGAGGAAATTGCAGTTACCTCATTCAACTGGATTCAAGACGGCTCAGCCATACCGACGTTGTGTCGTGGAAATGCTCAAGGATTTCCCATCTTCTGCGGTGGCTCTCGTGGATAAGTTGCTATCTATAGATCCTGCTCATCGAGGAACTGCAGCCGCTGCCTTAAAGAGCGAGTTTTTTACGACTAAACCGCTTGCTTGCGACCCTTCGAGTTTGCCCAAATATCCTCCGAGCAAAGAGATCGATGCAAAATTCCACAGCTGCAGGGGGCAACCAAGAGTTGAGGGCAAGGACCCAAAATATTATGCGGAAGGGAGGCGATCTAAGGAAGCTAACATTAATCTTTCTCTGAATGCTAAGGATGAGGCAAACATATTAATGCAGGTATTCTGTTGA 3780 43.76 MNGIIILRLRHDLYVKTRNSQIGIKLQALTEDHQVSQYNREDRASSNTLKRMSMKVKLRHEQSWSSIQPDRTLRLSNRLRFSRLIFKVLLPSAGLNETLDIVLNFVLFFEFGIGVYVLPDECSEHEHDSSNRAYSSRKHLSELKISRAGFPKSEKIWEKDRLDCSDVSVMLFDTKANGPLRSHGELPNERKKKADVPDITIVTHPCMGKIPNVTEAEQIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIAFMAREILVLRRLDHPNIVKLEGLITSQTSCHMYLVFEYMEHDLTGLASRPGTSFTEPQVAYIAHEHYNGVLHRDIKGSNLLIDNNGVLKIADFGLAVFYDSQSTVPMTSRVITLWYRPPELLLGASQYGAEVDLWSAGCILGELYAGKPILPGKTEVEQLHKIFKLCGSPSKEYWRNLHLKHSTSMKPPQTYERCLRERYDDIPHAAIELMDNLLSIDPAERGTAASALDSEFFSTRPLPCNPSSLPKLLVLRFTQATRSRWREKPSSRRRTKRTEAISAEDVILSLDSLTILLAELLRARHGRASKLFGLIMASSRVERELVGSLGNHSKPPPVLFFELMYISWDFGRTIENKTVESNKAYCLWMVCRRHGLRDREIEREWEFYSRTAGTGRLNMIIFENTCLNTRSEFKRRAQCSFLVTKRLYLFFIPFTSDYLFGLLIDESDSKYSGLRDFGNSFQFFLINNCLVFKLACLNRWLQVEIVISEETYDFVVSFWAAIMGCQCSKPSVHEDEQSRASEKLPSLKASGVNFSRKEEDVQFNSVKRDQGVRLNASQRADGIRSKLKPEGGDLKVAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHGKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLIFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSHGVLHRDIKGSNLLINANGILKIADFGLASHFDPHNHVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPENYWRKLQLPHSTGFKTAQPYRRCVVEMLKDFPSSAVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACDPSSLPKYPPSKEIDAKFHSCRGQPRVEGKDPKYYAEGRRSKEANINLSLNAKDEANILMQVFC 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1063611 1072854 + CmoCh20G002220.1 Cmo20g00222 404539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00222 1259 SUPERFAMILY Protein kinase-like (PK-like) 899 1194 IPR011009 -
Cmo20g00222 1259 ProSitePatterns Protein kinases ATP-binding region signature. 910 933 IPR017441 GO:0005524
Cmo20g00222 1259 Pfam Protein kinase domain 904 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00222 1259 Pfam Protein kinase domain 215 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00222 1259 Gene3D Phosphorylase Kinase; domain 1 212 295 - -
Cmo20g00222 1259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1024 1036 IPR008271 GO:0004672|GO:0006468
Cmo20g00222 1259 CDD STKc_CDK9_like 904 1188 - -
Cmo20g00222 1259 Gene3D Phosphorylase Kinase; domain 1 891 986 - -
Cmo20g00222 1259 SUPERFAMILY Protein kinase-like (PK-like) 216 496 IPR011009 -
Cmo20g00222 1259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Cmo20g00222 1259 SMART serkin_6 904 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00222 1259 SMART serkin_6 213 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00222 1259 ProSiteProfiles Protein kinase domain profile. 213 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00222 1259 ProSiteProfiles Protein kinase domain profile. 904 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00222 1259 Gene3D Transferase(Phosphotransferase) domain 1 987 1223 - -
Cmo20g00222 1259 Gene3D Transferase(Phosphotransferase) domain 1 296 532 - -
Cmo20g00222 1259 PANTHER CELL DIVISION PROTEIN KINASE 215 503 - -
Cmo20g00222 1259 PANTHER CELL DIVISION PROTEIN KINASE 866 1253 - -
Cmo20g00222 1259 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 215 503 - -
Cmo20g00222 1259 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 866 1253 - -
Cmo20g00222 1259 ProSitePatterns Protein kinases ATP-binding region signature. 219 242 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo19g01029 Cmo20g00222 CCT
Cmo11g01960 Cmo20g00222 CCT
Cmo19g01029 Cmo20g00222 ECH
Cmo11g01960 Cmo20g00222 ECH
Cmo02g00098 Cmo20g00222 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00583 Cmo-Chr4:2911153 Cmo20g00222 Cmo-Chr20:1063611 6.74E-144 dispersed
Cmo16g00430 Cmo-Chr16:2044031 Cmo20g00222 Cmo-Chr20:1063611 3.46E-143 dispersed
Cmo20g00222 Cmo-Chr20:1063611 Cmo14g01688 Cmo-Chr14:13249022 4.49E-129 dispersed
Cmo02g00098 Cmo-Chr2:523545 Cmo20g00222 Cmo-Chr20:1063611 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75135 PF00069 Pkinase 3.00E-67 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00222 - - cmo:103490535 914.835