Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00235 ATGTTCATGTTCATTCTCTCACTGACGGGATCAAGATTCAAATGTTCCGATCCGCTCCTGCTTGAAGTTATTGGGGGAAAGCCAAGGGTTTTATCAGTGGTTTTGTTGAGCATGGAGGATCAGCGAGACGATGTTGCACCATCAGAGCAAGGGACTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGTGGAGAAATTTGGATCTGTTTCTTTGGGTCCTCGGGAAGACATTGTGAGTGAAAGGGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTGTCGCCTCAGAGAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTATGTTATTCCGGATAAGAGGCTAAAAGAGCGGTTCCACAGTATTCCTTCGTTAGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGAAACGATGTTATTCTTGTGGAGCCAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTCAACACTGATTAAAGGCGTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTGTAGAAGATGCCAACCACTTGTTTGAGGATAGAGGCATTCAGTTGCTCGGTCAAATAAAATTTGGTTCTTGCCGTCCTAGAGCTATCTTATTTAAGGTTCTGGCGGACACTGTAGGGCTTGAAAGTCGTCTCATGATGGGCTTGCCAAATGAGGGGGCTAATGGGTGCGTGGACTCATACAAGCACATGTCGGTGACAGTTGTGTTGAATTCTGTCGAACTAGTTGTTGATCTGATGCGATTTCCTGGCCAGTTGTTACCTCAGTCAACTAAGGCAATTTTTATGACACATATTTCCGCTGCTGGGGAAAGCGATTCTGCAGAAAACGACTCATGTGATTCACCACTAGAACCTAACAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCTTGACAGTGGTGAAAAAGATGAGAGCCTTCAATTCCACAGAAAAATTGAAGCAGCTTCAAATGCATATGCTCCTTCATTGCGCAATATGATGTTGCGATCAAGCACAACACTCGACAGGAAAATGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGAAGTTGTCGGAGAAAAGATATTGCTGAACAGCGGACTGCTAGTTCAAGCAGTCCAGAGCATCCTTCATTTCGGGCGCGAGGCCGGTCCATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACTTCCACTTCCACTTCGGCTTCAAATTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGAACAAGTAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAATAGTTCAGATGTTCGGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCATTACCGTCATCGCCACATGATTATAGGGGTCAAACCTCTGATAGAAGTGGGCATTCAGCATGGACTAAAGTTCTTGAATCATTCTCCTTGAACGACAAACCCCTATTACCTTACCCCGAGTGGAATATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATCGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGGACGGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAGGACTTCTGTAATGAGATATTAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTATTTCTGGGCGCATGTACAGAACCGCCACGCTTGTCGATGATCACAGAATATATGGAGCTGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCACCGGGACCTGAAAAGTGCAAATTGCCTTGTCAACAAGCATTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAACGAACCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATCATGTGGGAGCTTTGCACGCTAAGTAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTAGAGATTCCTGAAGGCCCGCTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCGAATGAGCGGCCAAGCTGCGAAGAGATTGTCACCCGCTTGCTCGATTGCGAAAAACATGGTAGAGTTGCAACTTTTGATGTCCTCGGCTCCTATTCTGAACTCTTGTTGATTTTTCCAACCGTTCTATGA 2571 44.19 MFMFILSLTGSRFKCSDPLLLEVIGGKPRVLSVVLLSMEDQRDDVAPSEQGTSNASWWSSDFVEKFGSVSLGPREDIVSEREEIINSDQDVLLSPQRASQILWRTGMLCEPIPDGFYYVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVEPEKDKKLSMLKQLISTLIKGVSSNPAAIIKKIAGLVSDFYKRPILESPAKAAVEDANHLFEDRGIQLLGQIKFGSCRPRAILFKVLADTVGLESRLMMGLPNEGANGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPQSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDLDSGEKDESLQFHRKIEAASNAYAPSLRNMMLRSSTTLDRKMSLSHSEPNIANAFWRSCRRKDIAEQRTASSSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSTSTSASNSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLREQVDDRSFSHPSNERNNSSDVRRNDQVGSQRAISLPSSPHDYRGQTSDRSGHSAWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEILILSRLRHPNVILFLGACTEPPRLSMITEYMELGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEIVTRLLDCEKHGRVATFDVLGSYSELLLIFPTVL 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1141319 1150256 + CmoCh20G002350.1 Cmo20g00235 404552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00235 856 Gene3D Transferase(Phosphotransferase) domain 1 658 841 - -
Cmo20g00235 856 MobiDBLite consensus disorder prediction 422 439 - -
Cmo20g00235 856 Pfam Protein tyrosine and serine/threonine kinase 580 827 IPR001245 GO:0004672|GO:0006468
Cmo20g00235 856 CDD STKc_MAP3K-like 585 827 - -
Cmo20g00235 856 MobiDBLite consensus disorder prediction 494 518 - -
Cmo20g00235 856 SMART serkin_6 579 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00235 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Cmo20g00235 856 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 66 832 - -
Cmo20g00235 856 Pfam Ethylene-responsive protein kinase Le-CTR1 96 291 - -
Cmo20g00235 856 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 66 832 - -
Cmo20g00235 856 Gene3D Phosphorylase Kinase; domain 1 572 657 - -
Cmo20g00235 856 MobiDBLite consensus disorder prediction 440 459 - -
Cmo20g00235 856 ProSitePatterns Protein kinases ATP-binding region signature. 585 606 IPR017441 GO:0005524
Cmo20g00235 856 ProSiteProfiles Protein kinase domain profile. 579 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00235 856 SUPERFAMILY Protein kinase-like (PK-like) 552 826 IPR011009 -
Cmo20g00235 856 MobiDBLite consensus disorder prediction 494 547 - -
Cmo20g00235 856 MobiDBLite consensus disorder prediction 519 547 - -
Cmo20g00235 856 MobiDBLite consensus disorder prediction 402 469 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00082 Cmo20g00235 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00235 Cmo-Chr20:1141319 Cmo01g01773 Cmo-Chr1:13120602 2.49E-77 dispersed
Cmo02g00082 Cmo-Chr2:423661 Cmo20g00235 Cmo-Chr20:1141319 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75137 PF07714 PK_Tyr_Ser-Thr 1.60E-58 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00235 - - csv:101220859 1431.0