Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00250 ATGAGCATTAAAGAGGGGTATTTTCGTCATCGTGCTCCAAGTCAGATAGAGAGAGGAAGGAAAGAAGGGAAAAAAAAGGAGGAAAAAAGAAGAGGGTTCTCAACTACAGCGAAGGGAGGCTTGGCGTTGGAGGGTTTTTGCTTTGCATATTGTTCTTTTTCATTTCTTTCCCTCTTGCTTTTGCTCTTCACTTTATATCTATACTTTACCCTTTCTTCTTCTTCTTCTTCTTCGTTTCGACCAAAAGCAGCTGTGTCTGTGAGAAGAAGAAGCAAAAACAAAGAAAATAAGGCCACAACAATGGAGGACATCACTCACCCTCCCATGGAACAGCTCCAAGACCTTGAGTACTGCATAGACTCAAACCCCTCTTGGGCTGAAACCATCCTACTAGCTTTTCAGAATTACATTCTGATGCTAGGCACCAATGTGATGATTCCATCTTTAATCGTCCCAGCAATGGGTGGAGACAATGGAGACAAAGCACGAGTCATTCAGACTCTTCTTTTTGTAGCTGGCTTAAACACACTTCTCCAAGCACTGTTTGGAACTAGATTACCAGCAGTAGTTGGAGGCTCCTTTGCCTATGTTGTTCCTATAGCTTACATTGTCGGAGACTCGTCATTGCAACGGATTACCGATTCTCATGAAAGATTTTTACATACAATGCGTGCCATCCAAGGAGCTCTCATTGTTGCCTCAAGCATACAGATCATTCTCGGTTACAGCCAAGTTTGGGGCTTACTCTCACGCTTCTTCAGTCCATTGGGCATGGCTCCTGTTGTCGGATTGGTTGGCCTTGGCTTGTTTCAACGAGGATTTCCAGTGCTGGGGGAGTGTGTGGAAATAGGGTTGCCCATGCTCATACTTGTCATTGGATCATCACAATATCTAAAGCATGTGAGACTCTTCAGAGATCTTCCAATTTTTGAGAGATTTCCAGTGTTGATCTGTGTCACAATTGTTTGGATCTATTCTGTGATCTTAACCGCGAGCGGGGCGTATCGGCACAAGCCCATAAAAACCCAGTTAAGCTGCCGAACTGATAGAGCAAATCTTATTACCACTGCCCCATGGTTCAAGTTTCCATACCCTTTGCAATGGGGTCCTCCTACTTTTTCAGCTGGTCATTCATTTGCTATGATGGCTGCTGTTTTTGTTTCAATGGTTGAGTCAACCGGTGCATACAAGGCGGCCGCTCGCTTGGCAATCGCCACCCCTCCTCCTGCTTATGTACTGAGCCGAGGCATTGGCTGGCAGGGGATTGGCGTCCTGCTGAACGGTCTCTTTGGAACAACCACTGGTGCAACGGTTGCTGTGGAAAATGTGGGACTTCTTGGGCTTACCCGAGTTGGAAGTCGAAGGGTTGTTCAAATTTCTGCTGGTTTCATGATATTTTTCTCTACCTTGGGTAAATTTGGAGCTGTCTTTGCATCCATACCAATCCCCATCTTTGCTGCACTCTACTGTATACTCTTCGGCCTTGTTGCTTCGGTCGGATTATCATTTCTCCAGTTCACAAACATGAATTCAATGAGAAACCTCATCATCACAGGACTTTCACTGTTTCTCGGATTATCCATCCCCCAGTTTTTCAATGAATACTGGAACCCAACCCGCCGTGGACTTGTTCATTCGAACGCTGGATGGTTCAATGCGATTATGAACACAATATTCTCGTCGCCAGTAACAGTGTCGTTGGCAGTGGCTGTGTTTCTTGACAACACATTGGAGGTTGAAAAATCAAAGAAAGATAGAGGAATGCCATGGTGGGTGAAGTTCAGAACGTTCAGAGGAGACAACAGAAATGAAGAGTTCTATACTTTACCATTCAATCTTAACCGATTTTTCCCGCCAACTTGA 1863 44.93 MSIKEGYFRHRAPSQIERGRKEGKKKEEKRRGFSTTAKGGLALEGFCFAYCSFSFLSLLLLLFTLYLYFTLSSSSSSSFRPKAAVSVRRRSKNKENKATTMEDITHPPMEQLQDLEYCIDSNPSWAETILLAFQNYILMLGTNVMIPSLIVPAMGGDNGDKARVIQTLLFVAGLNTLLQALFGTRLPAVVGGSFAYVVPIAYIVGDSSLQRITDSHERFLHTMRAIQGALIVASSIQIILGYSQVWGLLSRFFSPLGMAPVVGLVGLGLFQRGFPVLGECVEIGLPMLILVIGSSQYLKHVRLFRDLPIFERFPVLICVTIVWIYSVILTASGAYRHKPIKTQLSCRTDRANLITTAPWFKFPYPLQWGPPTFSAGHSFAMMAAVFVSMVESTGAYKAAARLAIATPPPAYVLSRGIGWQGIGVLLNGLFGTTTGATVAVENVGLLGLTRVGSRRVVQISAGFMIFFSTLGKFGAVFASIPIPIFAALYCILFGLVASVGLSFLQFTNMNSMRNLIITGLSLFLGLSIPQFFNEYWNPTRRGLVHSNAGWFNAIMNTIFSSPVTVSLAVAVFLDNTLEVEKSKKDRGMPWWVKFRTFRGDNRNEEFYTLPFNLNRFFPPT 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1206450 1210439 + CmoCh20G002500.1 Cmo20g00250 404567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00250 620 Pfam Permease family 127 532 IPR006043 GO:0016020|GO:0022857|GO:0055085
Cmo20g00250 620 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 99 620 - -
Cmo20g00250 620 PANTHER NUCLEOBASE-ASCORBATE TRANSPORTER 2 99 620 IPR029948 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00294 Cmo20g00250 CCT
Cmo06g00436 Cmo20g00250 CCT
Cmo06g00436 Cmo20g00250 ECH
Cmo02g00068 Cmo20g00250 CST
Cmo02g01390 Cmo20g00250 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00801 Cmo-Chr12:6922313 Cmo20g00250 Cmo-Chr20:1206450 1.32E-109 dispersed
Cmo13g00294 Cmo-Chr13:2929877 Cmo20g00250 Cmo-Chr20:1206450 3.61E-111 dispersed
Cmo18g00403 Cmo-Chr18:2615734 Cmo20g00250 Cmo-Chr20:1206450 0 dispersed
Cmo13g00621 Cmo-Chr13:6735904 Cmo20g00250 Cmo-Chr20:1206450 0 wgd
Cmo02g00068 Cmo-Chr2:353978 Cmo20g00250 Cmo-Chr20:1206450 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00250 - - cmax:111483831 1051.58