Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00254 ATGAAATTCGAAGAGCAGAACCTGAAGCATCAGTCTGAACAGAGGTGCAGGAATATTGAGTTCGATACAATCGATCACCATCGCAGTATTTCGTCGCTGGTTGAATGCGAAGACTGCGAGAGGGATGGTGACGGCCTCTATATCCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCTGACTCTGCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAGCCATTCGTGAACATTCCGGATGATATGATTCGTGAAGCACTAAAAGTTGTCCTTGACGATAGGAATCACCCAGTTCTCATACATTGCAAAAGAGGAAAGCATCGAACAGGTTGTCTTGTGGGATGCCTTAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAGAGATTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAGCTGTTTGATATCTCTGACTTTAAGCATCATCCCATGTTATTCTCATGCTCAAAGAGTAACAATTTTCAGCTGTTTGATCATTCATCCCTGTCCCTGGTTCCTTCGAAGCCGAAGTTCGAAGTCCGAAGCTCAGTGGAAAAAGCAATCAATCAAAGGATGTCGGGGGTCACAAACACGCAGCAGGAGGAAGACAAAAAGCCTAACGATCAATCGGCGCATATCAATCTGAAGGTCAAAGGCCAGGATGGGAACGAGGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTATTCGATGGTCGTCGTCTTCGAGCAGAGCAGACCCCAGACGAGCTAGAGATGGAGGATGGGGATGAGATCGATGCAATGTTGCACCAAACAGGTGGATCGAGTGGTTGA 1029 45.68 MKFEEQNLKHQSEQRCRNIEFDTIDHHRSISSLVECEDCERDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLYQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDFKHHPMLFSCSKSNNFQLFDHSSLSLVPSKPKFEVRSSVEKAINQRMSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSG 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1227643 1233237 - CmoCh20G002540.1 Cmo20g00254 404571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00254 342 Pfam Ubiquitin-2 like Rad60 SUMO-like 264 334 IPR022617 -
Cmo20g00254 342 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 115 155 IPR000387 GO:0016311|GO:0016791
Cmo20g00254 342 ProSitePatterns Tyrosine specific protein phosphatases active site. 142 152 IPR016130 GO:0016311|GO:0016791
Cmo20g00254 342 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 13 207 - -
Cmo20g00254 342 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 207 - -
Cmo20g00254 342 CDD Ubl_Smt3_like 262 335 - -
Cmo20g00254 342 Pfam Tyrosine phosphatase family 47 200 IPR004861 -
Cmo20g00254 342 ProSiteProfiles Ubiquitin domain profile. 262 339 IPR000626 GO:0005515
Cmo20g00254 342 Gene3D - 232 339 - -
Cmo20g00254 342 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791
Cmo20g00254 342 PRINTS Plant and fungal dual specificity phosphatase signature 120 134 IPR020428 GO:0016791
Cmo20g00254 342 PRINTS Plant and fungal dual specificity phosphatase signature 47 64 IPR020428 GO:0016791
Cmo20g00254 342 PRINTS Plant and fungal dual specificity phosphatase signature 84 97 IPR020428 GO:0016791
Cmo20g00254 342 SMART ubq_7 264 335 IPR000626 GO:0005515
Cmo20g00254 342 CDD PFA-DSP_Siw14 46 193 - -
Cmo20g00254 342 Gene3D Protein tyrosine phosphatase superfamily 47 196 IPR029021 -
Cmo20g00254 342 SUPERFAMILY Ubiquitin-like 252 339 IPR029071 -
Cmo20g00254 342 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 203 IPR020422 GO:0006470|GO:0008138
Cmo20g00254 342 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 194 IPR029021 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00063 Cmo20g00254 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00065 Cmo-Chr2:339813 Cmo20g00254 Cmo-Chr20:1227643 2.37E-66 dispersed
Cmo10g00860 Cmo-Chr10:4080061 Cmo20g00254 Cmo-Chr20:1227643 1.88E-74 dispersed
Cmo11g00963 Cmo-Chr11:5063323 Cmo20g00254 Cmo-Chr20:1227643 1.82E-77 dispersed
Cmo19g01071 Cmo-Chr19:9260978 Cmo20g00254 Cmo-Chr20:1227643 4.08E-29 dispersed
Cmo20g00253 Cmo-Chr20:1222686 Cmo20g00254 Cmo-Chr20:1227643 1.78E-68 tandem
Cmo11g02016 Cmo-Chr11:13756868 Cmo20g00254 Cmo-Chr20:1227643 1.27E-104 wgd
Cmo19g01077 Cmo-Chr19:9285905 Cmo20g00254 Cmo-Chr20:1227643 2.38E-102 wgd
Cmo02g00063 Cmo-Chr2:325814 Cmo20g00254 Cmo-Chr20:1227643 1.75E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00254 K18045 - csv:101222170 370.163