Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00257 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCTCTGATATCTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGTGAACCTGATTGCTTATATTATATGAGAACTGGATCTTGTAGCTATGGAAGTAATTGTCGCTTTAATCATCCTGTCTTCGTTGCTCAGGGTGCTATGTATAATGGGGAACTTCCTGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTACCACCATCCAAGAGATAGACGTGGAGCTGGGCCTGTTAGATTTAATATTTTAGGCCTTCCCATGCGACAGGAAGAAAAGTCATGCCCTTACTATTTGCGAACTGGGTCGTGTAAATTTGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCCCCAGTTGGAAATATGTTACATCCCGCTCGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTGCATCAGGTGTGCCATATACTGGTGCAGTTCCCGCATGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGTGTACAGGGCCAACAATCTTTTGTGCCTGTCTTGGTTTCTCCATCACAAGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTACAATTCTATCAATTTGGAAGAGCCGTATTCTAATGGGCAGTTGGCCTCGTCAACTGCAACTCCAACGCTACCTGATCGACCCGATCAACCAGAATGTCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAATTCCATCATCCGAAACAAAGAATTGCACAATCAGCAACAAATCCGCTTGGGCTTCCTTCAAGACCCGGACAAGCTGTATGTTCATACTACAATATGTATGGTCTCTGCAAGTATGGCCCAAGCTGTAAATTTGATCACCCATCTGCAACATATCCTTATAATTATGGCTTCACTCTGCCTGTGCTTGATTCATCTTTCATGAAGTATCCAAGCAACAACTTCACGATGTCCTCTCATGAGGCCCTGCCCCAGACGGTATCTAAATCTTCTGAATGGGTTCAGAAAGCCGATCCTTCGAACAACAAACGTCGAACTACGAATTCAATAGTCGTAGTCGACAGCACAGCTGAAGAGGCAACCACTGTTTCGTGCTCATTACCAGGTGGTTCCGAAACTTTACAAGATCAATCTGGTTGA 1311 45.46 MPDNLQVQRNAVPNQSSDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVFVAQGAMYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVRFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLHPARPGALGSAGTPFMPASGVPYTGAVPAWSLPRVQYMPGPCVQGQQSFVPVLVSPSQGAIAAQDWNTYVGNVSPVLPNLGYNSINLEEPYSNGQLASSTATPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNPLGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLDSSFMKYPSNNFTMSSHEALPQTVSKSSEWVQKADPSNNKRRTTNSIVVVDSTAEEATTVSCSLPGGSETLQDQSG 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1256481 1260501 + CmoCh20G002570.1 Cmo20g00257 404574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00257 436 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Cmo20g00257 436 SUPERFAMILY CCCH zinc finger 322 347 IPR036855 GO:0046872
Cmo20g00257 436 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Cmo20g00257 436 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Cmo20g00257 436 Gene3D - 119 169 - -
Cmo20g00257 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Cmo20g00257 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Cmo20g00257 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Cmo20g00257 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Cmo20g00257 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Cmo20g00257 436 PANTHER PROTEIN PHOSPHATASE RELATED 5 411 - -
Cmo20g00257 436 MobiDBLite consensus disorder prediction 383 406 - -
Cmo20g00257 436 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Cmo20g00257 436 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872
Cmo20g00257 436 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Cmo20g00257 436 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 5 411 - -
Cmo20g00257 436 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Cmo20g00257 436 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cmo20g00257 436 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Cmo20g00257 436 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Cmo20g00257 436 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Cmo20g00257 436 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Cmo20g00257 436 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Cmo20g00257 436 Gene3D - 45 118 - -
Cmo20g00257 436 Gene3D - 274 353 - -
Cmo20g00257 436 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00060 Cmo20g00257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00184 Cmo-Chr18:1268440 Cmo20g00257 Cmo-Chr20:1256481 2.45E-11 dispersed
Cmo19g01154 Cmo-Chr19:9711397 Cmo20g00257 Cmo-Chr20:1256481 4.64E-10 dispersed
Cmo02g00060 Cmo-Chr2:309781 Cmo20g00257 Cmo-Chr20:1256481 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11703 PF00642 zf-CCCH 5.00E-08 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00257 - - cpep:111777449 918.302