Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00274 ATGGATGTTAGTGCACGAGCTCGTTTCCCACTCGGCAAACAGTCATCGCTCAAGCCGGAACGTGAAGATTCGGCTGTGGTTACCGATGAGCTTGATGATTCGATCGTGATTGACCCTGGGATTAAGCTCATGTACCTGGCGAATGATGGCGATTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTAGTTGTCAGGGCAGGCTGGACGTCGTTGAGTTGCTACTCGAACGTGGTGCAGACGTTGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAAAAACATGGTGCAAAGCTACCGATGGCTCCAATGGTAGTGCAAAATGCTCTTGAAGTTCCGGAATATGAGATCGATCCAAATGAACTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCTGCAGTGCTTCTTGGCGTGGAATTGAAGTTGCCGTGAAGACACTAGGCAAGGATGTTTTCTCCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTACAGAAGATACGGCATCCTAATGTTGTGCAATTCCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGGAGTGTAAAGGTTCCTTGAAGCTACCAACAGTTGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGTGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCTAATAGAGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGAGACTTCATGGAAATATGCTGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAAAGTGGATGTGTTTTCATTTGCTTTGATATTGCAAGAGATGATAGAAGGCAATCCACCTTTTTCAACAAAGCCAGAAAATGAAGTACCCAAAGCTTATGTAGCTAATGAACGGCCACCATTTACGGCTCCACCTAAGCGTTATCGGCATGGAATACAGGAACTAATCCAGGAATGTTGGGATGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATAATCGAAAGGTTGGAGGATATTAACACTAAACTTATGCAAACAAGAAGCTTGAAGGTGAATCCATTCTGCAATTGTTTCCGGAACCTGAAAGCCTTATTTACAAGTGAAAGGACCAATCCAGGCAGCAGATCTTCTTACTCGGAAGCCAAATGA 1386 43.72 MDVSARARFPLGKQSSLKPEREDSAVVTDELDDSIVIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVASCQGRLDVVELLLERGADVDVQDRWGSTPLADAIYYKNHDVIKLLEKHGAKLPMAPMVVQNALEVPEYEIDPNELDFSKSVNITKGTFCSASWRGIEVAVKTLGKDVFSDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLECKGSLKLPTVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQETSWKYAAPEVYKNEEYDTKVDVFSFALILQEMIEGNPPFSTKPENEVPKAYVANERPPFTAPPKRYRHGIQELIQECWDEKPHKRPTFRQIIERLEDINTKLMQTRSLKVNPFCNCFRNLKALFTSERTNPGSRSSYSEAK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1334263 1342162 + CmoCh20G002740.1 Cmo20g00274 404591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00274 461 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 9 441 - -
Cmo20g00274 461 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cmo20g00274 461 SUPERFAMILY Protein kinase-like (PK-like) 172 445 IPR011009 -
Cmo20g00274 461 CDD STKc_MAP3K-like 162 415 - -
Cmo20g00274 461 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cmo20g00274 461 Pfam Protein tyrosine and serine/threonine kinase 163 415 IPR001245 GO:0004672|GO:0006468
Cmo20g00274 461 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 441 - -
Cmo20g00274 461 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Cmo20g00274 461 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cmo20g00274 461 SMART ANK_2a 39 67 IPR002110 GO:0005515
Cmo20g00274 461 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cmo20g00274 461 Gene3D Transferase(Phosphotransferase) domain 1 140 436 - -
Cmo20g00274 461 SUPERFAMILY Ankyrin repeat 42 134 IPR036770 -
Cmo20g00274 461 ProSiteProfiles Protein kinase domain profile. 156 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00274 461 PIRSF ILK 2 438 - -
Cmo20g00274 461 Gene3D - 35 139 IPR036770 -
Cmo20g00274 461 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01759 Cmo-Chr4:8876062 Cmo20g00274 Cmo-Chr20:1334263 5.87E-95 dispersed
Cmo10g00827 Cmo-Chr10:3888062 Cmo20g00274 Cmo-Chr20:1334263 5.53E-09 dispersed
Cmo11g00775 Cmo-Chr11:3792417 Cmo20g00274 Cmo-Chr20:1334263 3.18E-09 dispersed
Cmo16g00572 Cmo-Chr16:2768399 Cmo20g00274 Cmo-Chr20:1334263 7.34E-11 dispersed
Cmo18g00417 Cmo-Chr18:2743160 Cmo20g00274 Cmo-Chr20:1334263 0 dispersed
Cmo18g01147 Cmo-Chr18:11734150 Cmo20g00274 Cmo-Chr20:1334263 2.69E-106 dispersed
Cmo19g00317 Cmo-Chr19:2394226 Cmo20g00274 Cmo-Chr20:1334263 6.48E-113 dispersed
Cmo20g00123 Cmo-Chr20:615874 Cmo20g00274 Cmo-Chr20:1334263 2.20E-15 dispersed
Cmo20g00274 Cmo-Chr20:1334263 Cmo11g01758 Cmo-Chr11:12398386 1.27E-49 dispersed
Cmo12g00524 Cmo-Chr12:3221711 Cmo20g00274 Cmo-Chr20:1334263 4.69E-06 transposed
Cmo02g00047 Cmo-Chr2:243063 Cmo20g00274 Cmo-Chr20:1334263 0 wgd
Cmo20g00274 Cmo-Chr20:1334263 Cmo03g01350 Cmo-Chr3:9989335 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75138 PF07714 PK_Tyr_Ser-Thr 8.10E-57 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00274 - - cpep:111777411 922.154