Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00275 ATGAGAGCAGCAGCTCATCTTGGCACGAAGCTCGGCAATTATGGGGCCAAAATCTTGCTGGGGAAATCATCGTATTGGCGTATTAACCTGATACCTATTTTGGCTTGTGACGTTCTAAAAATTAGAGGACTTGGTGGCCCAGCCCAATCGCAAACCCTAGATGGCGCTAAGAGGAAATGCTTCTTTGATACCGCATATTCGGCGTCGCTATCACTTCCCACCACCTCTTATTCCTTCTCTCACTCCCGCTGTTTCGGCGCCTGTACTATTCTTTTGTGGAGGCTCAAAGAGACAGTCTCTTCCTTTGCTCTCCCGTCATCGTCTCTCAGACTCTTCTTTCTTGTGAAGTTTACAGCCGAGGAGCTTCGTCGGATTATGGACTATAAACACAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCCGGTATCATTGCTCAAGAAGTTGCTGGTGATGTTCGGATGACAGATACCCGACAAGATGAGGCAGAACGGGGTATCACCATCAAGTCGACTGGAATCTCTCTCTACTATGAAATGTCTGATGATTCATTGAAGAGTTATAAGGGAGAGAGGAATGGAAATGAGTACCTTATCAATCTTATCGATTCACCTGGGCACGTCGACTTCTCGTCTGAGGTTACAGCTGCTCTACGTATTACCGATGGTGCCCTTGTGGTGGTGGATTGTGTTGAAGGTGTTTGTGTCCAAACGGAGACAGTGCTTCGTCAGGCATTGGGAGAGAGGATTCGACCTGTGTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTTCAAGTAGATGGCGAAGAGGCTTACCAGACCTTCCAGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAGGATCCACTTCTTGGTGATGTGCAAGTGTACCCTGAGAAGGGAACAGTTGCTTTCTCTGCTGGTCTGCACGGTTGGGCTTTCACCCTGACCAACTTTGCAAAGATGTACGCCTCTAAATTTGGAGTGGATGAGTCAAAAATGATGGAGAGGCTTTGGGGCGAGAACTTCTTCGACCCTGCCACCAAGAAATGGACCAGCAAGAACACTGGATCTGCAACGTGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATTATTGCTACGTGCATGAATGACCAGAAGGACAAGCTATGGCCTATGTTGCAGAAGCTTGGAGTTGTCATGAAATCTGAAGAGAAGGATCTGATGGGTAAAGCATTGATGAAGCGAGTGATGCAAACATGGCTCCCAGCAAGCAGTGCTCTCTTGGAAATGATGATCTTTCATCTCCCTTCCCCGGCCACGGCCCAGAAGTATCGTGTTGAGAACTTGTATGAAGGTCCACTAGATGATGCTTATGCTAGTGCCATCAGAAATTGTGACCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCGGACAAGGGCAGGTTCTTTGCCTTCGGTCGTGTCTTCTCTGGGAAGGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCAAACTATGTCCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAATACGGTTGCCATGGTTGGGTTGGATCAATTTATCACCAAGAATGCTACTCTGACAAATGAGAAGGAAGTAGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTTGTGGAAGGCCTCAAACGTCTGGCGAAGTCTGACCCTATGGTTGTGTGTTCCATGGAGGAATCTGGTGAGCATATTGTGGCTGGGGCTGGAGAACTACATCTTGAGATCTGTCTGAAGGATTTGCAAGACGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCCTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGCAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCCATGGAGGAAGGATTGGCAGAGGCTATTGACGATGGTCGCATAGGCCCACGTGATGATCCTAAAATTCGGTCTAAAATTTTGGCGGAGGAGTTTGGTTGGGACAAGGATCTCGCGAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTGGTGGCAGGTTTCCAGTGGGCGTCTAAAGAAGGTGCGTTGTCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTGTGTGATGTGGTTCTTCATGCTGATGCCATCCACAGAGGAGGTGGTCAAGTTATTCCCACAGCTAGGAGGGTAATTTACGCATCTCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTGTACCTGGTGGAAATTCAGGCCCCGGAGCAAGCTTTGGGAGGTATTTACAGTGTTCTTAACCAGAAGCGTGGACATGTGTTCGAGGAAATGCAGAGGCCTGGTACACCTCTCTACAACATCAAGGCATATCTCCCTGTCATTGAGTCGTTCGGATTCTCGAGCACTCTGAGAGCTGCAACTTCTGGCCAGGCTTTCCCTCAGTGTGTGTTTGACCATTGGGACATGATGTCCTCAGATCCATTAGAAAGTGGCTCCCAAGCTGCACAGTTGGTTGCTGATATCCGTAAGAGGAAGGGATTGAAGGAACAGATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG 2871 47.58 MRAAAHLGTKLGNYGAKILLGKSSYWRINLIPILACDVLKIRGLGGPAQSQTLDGAKRKCFFDTAYSASLSLPTTSYSFSHSRCFGACTILLWRLKETVSSFALPSSSLRLFFLVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDDSLKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1342518 1347443 + CmoCh20G002750.1 Cmo20g00275 404592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00275 956 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 130 457 IPR000795 GO:0003924|GO:0005525
Cmo20g00275 956 Gene3D - 116 350 IPR027417 -
Cmo20g00275 956 CDD EF2_snRNP_III 600 672 - -
Cmo20g00275 956 CDD eEF2_snRNP_like_C 840 918 - -
Cmo20g00275 956 CDD EF2 133 343 - -
Cmo20g00275 956 Pfam Elongation factor Tu domain 2 507 580 IPR004161 GO:0005525
Cmo20g00275 956 SUPERFAMILY EF-G C-terminal domain-like 597 673 IPR035647 -
Cmo20g00275 956 Gene3D - 683 835 IPR014721 -
Cmo20g00275 956 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 171 186 IPR031157 -
Cmo20g00275 956 Gene3D Translation factors 456 597 - -
Cmo20g00275 956 CDD aeEF2_snRNP_like_IV 672 844 - -
Cmo20g00275 956 PANTHER - 114 955 - -
Cmo20g00275 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 454 IPR027417 -
Cmo20g00275 956 SUPERFAMILY Translation proteins 455 589 IPR009000 -
Cmo20g00275 956 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 114 955 - -
Cmo20g00275 956 SUPERFAMILY EF-G C-terminal domain-like 840 951 IPR035647 -
Cmo20g00275 956 Pfam Elongation factor G C-terminus 837 924 IPR000640 -
Cmo20g00275 956 SMART EFG_C_a 837 926 IPR000640 -
Cmo20g00275 956 PRINTS GTP-binding elongation factor signature 230 241 IPR000795 GO:0003924|GO:0005525
Cmo20g00275 956 PRINTS GTP-binding elongation factor signature 134 147 IPR000795 GO:0003924|GO:0005525
Cmo20g00275 956 PRINTS GTP-binding elongation factor signature 266 275 IPR000795 GO:0003924|GO:0005525
Cmo20g00275 956 PRINTS GTP-binding elongation factor signature 178 186 IPR000795 GO:0003924|GO:0005525
Cmo20g00275 956 PRINTS GTP-binding elongation factor signature 214 224 IPR000795 GO:0003924|GO:0005525
Cmo20g00275 956 SUPERFAMILY Ribosomal protein S5 domain 2-like 675 839 IPR020568 -
Cmo20g00275 956 Gene3D - 836 956 - -
Cmo20g00275 956 Pfam Elongation factor Tu GTP binding domain 130 455 IPR000795 GO:0003924|GO:0005525
Cmo20g00275 956 Pfam Elongation Factor G, domain III 600 662 IPR041095 -
Cmo20g00275 956 CDD EF2_II 488 583 - -
Cmo20g00275 956 Pfam Elongation factor G, domain IV 724 835 IPR005517 GO:0005525
Cmo20g00275 956 TIGRFAM small_GTP: small GTP-binding protein domain 133 289 IPR005225 GO:0005525
Cmo20g00275 956 Gene3D Elongation Factor G (Translational Gtpase), domain 3 599 676 - -
Cmo20g00275 956 SMART EFG_IV_2 719 835 IPR005517 GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00806 Cmo-Chr11:3985363 Cmo20g00275 Cmo-Chr20:1342518 1.35E-132 dispersed
Cmo20g00275 Cmo-Chr20:1342518 Cmo04g02883 Cmo-Chr4:20518974 1.66E-22 dispersed
Cmo20g00272 Cmo-Chr20:1329833 Cmo20g00275 Cmo-Chr20:1342518 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00275 K03234 - csv:101209544 1656.34