Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00279 ATGTTAGGGAAAGATTTCCATACCCTTATAGGAATGCTTTGTAGGATCTCACAATCCAGGGCCAGTGTCCTCGCTGATACAATGCCCGTTGAGCTCACCCAGATTTCAGCCACGGAGTTCCCAAGCCAAGCTGGAGAAGGATCTGCCTCTTCCCACAAAAAAATGGGAAGAGGTAAGATTGAAATTAAACGAATTGAAAATACCACAAATCGTCAAGTCACCTTTTGCAAGAGAAGAAATGGTTTGCTTAAAAAAGCCTACGAGTTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCACTCGTGGCCGTCTCTATGAATATGCCAATAACAGTGTTAGAGGAACCATTGAAAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCTGGATTATCAGTGGCAGAAGCTAATGTACAGTTTTACCAGCAAGAAGCATCGAAGCTGAAGAGACAGATCCGGGAGATTCAAAACTCGAACAGGCATATTCTTGGTGAAGCACTCAGCTCATTGTCTTTAAAGGACCTGAAAAGCTTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGGAAATGGAGCTTCAGAATCACAACAACTATCTGCGAGCACAGATTGCTGAACACGAAAGAATACCACAACAGCAACAACAGCAACAAACGAACATGATGCAAAGGGGAACATATGAGACAGTGGGAGGAGGGCAGTACGAGGAGAACAGAAGCTATGGCGGCGTGGGGCTTATGGATTCGGACACCCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTCGTTTAA 864 44.91 MLGKDFHTLIGMLCRISQSRASVLADTMPVELTQISATEFPSQAGEGSASSHKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIPQQQQQQQTNMMQRGTYETVGGGQYEENRSYGGVGLMDSDTHYAHQDHLTALQLV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1353372 1358428 + CmoCh20G002790.1 Cmo20g00279 404596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00279 287 ProSitePatterns MADS-box domain signature. 57 111 IPR002100 GO:0003677|GO:0046983
Cmo20g00279 287 ProSiteProfiles K-box domain profile. 142 232 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo20g00279 287 PANTHER MADS BOX PROTEIN 51 280 - -
Cmo20g00279 287 SUPERFAMILY SRF-like 56 127 IPR036879 GO:0003677|GO:0046983
Cmo20g00279 287 Coils Coil 179 199 - -
Cmo20g00279 287 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 51 280 - -
Cmo20g00279 287 Coils Coil 135 162 - -
Cmo20g00279 287 PRINTS MADS domain signature 57 77 IPR002100 GO:0003677|GO:0046983
Cmo20g00279 287 PRINTS MADS domain signature 77 92 IPR002100 GO:0003677|GO:0046983
Cmo20g00279 287 PRINTS MADS domain signature 92 113 IPR002100 GO:0003677|GO:0046983
Cmo20g00279 287 Pfam K-box region 141 226 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo20g00279 287 SMART madsneu2 55 114 IPR002100 GO:0003677|GO:0046983
Cmo20g00279 287 CDD MADS_MEF2_like 56 132 IPR033896 GO:0000977|GO:0045944
Cmo20g00279 287 ProSiteProfiles MADS-box domain profile. 55 115 IPR002100 GO:0003677|GO:0046983
Cmo20g00279 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 64 111 IPR002100 GO:0003677|GO:0046983
Cmo20g00279 287 Gene3D - 68 130 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00301 Cmo-Chr16:1370498 Cmo20g00279 Cmo-Chr20:1353372 1.17E-46 dispersed
Cmo20g00279 Cmo-Chr20:1353372 Cmo08g00175 Cmo-Chr8:1016886 2.08E-47 dispersed
Cmo20g00870 Cmo-Chr20:4407385 Cmo20g00279 Cmo-Chr20:1353372 4.80E-21 dispersed
Cmo13g00604 Cmo-Chr13:6645765 Cmo20g00279 Cmo-Chr20:1353372 7.15E-53 wgd
Cmo20g00279 Cmo-Chr20:1353372 Cmo03g01352 Cmo-Chr3:9999265 4.96E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11705 PF01486 K-box 1.70E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00279 K09264 - csv:101217987 398.282