Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00282 ATGGAGGATCGGGGAAGGGCGATGGAAAAAGTGCGCTGCTCTGCTTGTGATCCGTTTATGCAACAGAATTCGACCGAAATGGAGTTTTTCTCTGATTATGGCGATGCCAGTAGATACAAAATTCAGGAAGTAATCGGTAAAGGAAGCTATGGGGTTGTGTGTTCTGCTATTGACACACGCACTGGCGACAAGGTTGCAATAAAGAAGATACACAATATTTTTGAGCATATATCTGATGCTGTTAGAATTCTTCGTGAGATTAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACATGTTATGCTGCCACCTTCACGGAGGGATTTCAAAGATATCTACGTTGTTTTTGAGCTGATGGAATCAGATCTTCACCAAGTTATTAAAGCTAATGATGATCTTACTCGAGAACATTACCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGGCGCATCTGACTCAAAGCTTCATTTTGCAGCTAATGTCTACCATCGAGATTTAAAACCAAAGAATATATTAGCAAATTCAAATTGTAAACTTAAAATATGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACGCCAACGACAATTTTCTGGACGGTATGTCAGAGATTTACCACGCTTTGGAAAGAATTTAGTTTGGCCAATACTCATTTGTGTGAAATTAATGGTGTTTCTTGTGTTCTTGGTTTGAATGATAAAACCTTAAGCATTTTGTACTTGATGATAACGATTATGTTGCTACTAGATGGTACCGGGCTCCCGAGCTCTGTGGTTCATTTTTCTCTAAGTTACTTACTAGACGAGACTGTCACTTGCTCAGGTGCTTATACACCTGCAATTGATATATGGAGCATTGGCTGCATATTTGCTGAAGTTTTAATGGGGAAGCCACTTTTTCCTGGTAAAAACGTCGTTCACCAGCTTGATTTGATGACAGATCTCCTTGGAACTCCTCCACTAGATACAATCTCCAGGGTACGCAATGACAAGGCTAGAAGGTATTTAACTACTATGAGGAAAAAGCAGCCAGTGCCGTTTGCTCAAAAGTTTCCGAACGCAGATCCTTTAGCGCTGAGACTTCTAGAAAGGTTGCTTGCTTTCGATCCAAAAGATAGGCCGACTGCTGAAGAGGTCTTGCATTTTCCTATAAAATGTTTACTCTATTTTGAATATGCTTATTTGAAAAGTGCTTTTTATGCACTGGCTGATCCATACTTCAAGGGATTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCTCAAAGATGGAATTTGAATTTGAGAGGCGGAGGGTCGCAAAAGAAGACATTCAAGAGCTAATCTTCCGGGAGATACTAGAATATCACCCTCAGCTACTAAAAGATTACATGAATGGGACTGAGAGGACAAATTTTCTATATCCAAGTGCTGTCGACCAATTTAGAAAGCAGTTTGCACATCTGGAGGAAAATGGTGGTAAAAGTGCGCCGGTTATGCCTCTTGACAGGAAGCATGTATCCCTTCCAAGAATCTGTGCATTTCTATGGATCATGTGTCCTATAGCAAACATAAAATCGAAATACCAAATGAACATCATACCGGGGTCAACAGTTGTACACTTGAACCCGGTCTATTCTAAGGACCTAATAAATAATGTACCCCTTCAAGATGTGAAGATCTCCGAAGAGTCATACCGAAAGAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCAAGGACCATGCAGGCACCACAGAAAATCCCGATTGGTACTTGTGCAACTTTTCTTATCTTTATATGTTTGACCATTCAAATATCAGATTTACCAATTCCTCGACCGTGTTTCACTTCAGCAGCCAAGCCTGGAAGAGTGGTTGGACCAGTAATAGCAGATGAGAATGGGAGGGTAGTGAAGGAACCATATGATCCAAGAACGTTGATCAGAGGAGCCATTCTTCCTCCTACATATCACTACCAAAAACCCATTGCTGGAAATCAAGAAAGATCTGCAGCAGAAACAAAACTGGATATTTCATTAAGAGCCACTAAGCAAGCATCCCAGTGTGGCATGGCTTCCAAATTAGGATCAGATATAGCCATCAGCATCGACTCGAACCCTTTTTACATGACACGAGCAGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCGACACGAACTTTCTGCAGGCCAAGGCGGCCCAATACAGTGGTCTGGGTGCAGCAACGGCCACCACCACATCGGTCGCTCACAGAAAGGTGATTGCTGGTCAGTATAGCATGACGAAGATGTACTAG 2325 41.59 MEDRGRAMEKVRCSACDPFMQQNSTEMEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTGASDSKLHFAANVYHRDLKPKNILANSNCKLKICDFGLARVAFSDTPTTIFWTVCQRFTTLWKEFSLANTHLCEINGVSCVLGLNDKTLSILYLMITIMLLLDGTGLPSSVVHFSLSYLLDETVTCSGAYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPPLDTISRVRNDKARRYLTTMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEVLHFPIKCLLYFEYAYLKSAFYALADPYFKGLAKIEREPSCQPISKMEFEFERRRVAKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVMPLDRKHVSLPRICAFLWIMCPIANIKSKYQMNIIPGSTVVHLNPVYSKDLINNVPLQDVKISEESYRKNSRDSEGRLTNISRTMQAPQKIPIGTCATFLIFICLTIQISDLPIPRPCFTSAAKPGRVVGPVIADENGRVVKEPYDPRTLIRGAILPPTYHYQKPIAGNQERSAAETKLDISLRATKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISIDTNFLQAKAAQYSGLGAATATTTSVAHRKVIAGQYSMTKMY 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1368617 1372570 - CmoCh20G002820.1 Cmo20g00282 404599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00282 774 Gene3D Phosphorylase Kinase; domain 1 442 464 - -
Cmo20g00282 774 SMART serkin_6 39 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00282 774 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 23 211 - -
Cmo20g00282 774 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Cmo20g00282 774 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 287 618 - -
Cmo20g00282 774 Gene3D Transferase(Phosphotransferase) domain 1 123 204 - -
Cmo20g00282 774 Pfam Protein kinase domain 39 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00282 774 Pfam Protein kinase domain 272 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00282 774 CDD STKc_TDY_MAPK 38 463 - -
Cmo20g00282 774 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 287 618 - -
Cmo20g00282 774 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 23 211 - -
Cmo20g00282 774 ProSiteProfiles Protein kinase domain profile. 39 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00282 774 SUPERFAMILY Protein kinase-like (PK-like) 35 394 IPR011009 -
Cmo20g00282 774 Gene3D Transferase(Phosphotransferase) domain 1 280 394 - -
Cmo20g00282 774 Gene3D Transferase(Phosphotransferase) domain 1 397 441 - -
Cmo20g00282 774 Gene3D Phosphorylase Kinase; domain 1 37 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00282 Cmo-Chr20:1368617 Cmo08g01148 Cmo-Chr8:7341665 0 dispersed
Cmo11g02038 Cmo-Chr11:13860920 Cmo20g00282 Cmo-Chr20:1368617 0 wgd
Cmo19g01097 Cmo-Chr19:9403201 Cmo20g00282 Cmo-Chr20:1368617 0 wgd
Cmo02g00040 Cmo-Chr2:218307 Cmo20g00282 Cmo-Chr20:1368617 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75139 PF00069 Pkinase 8.30E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00282 - - csv:101216657 716.457