Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00284 ATGTCAAATAATGAAGATCATGAGAAGGATCCTTATTACCCAAACTTTGAAGCTTTTGATCCTTCTAATGTGGGGTTTTACTCTGATTTCTTATATGACTACAACAACTTCCTCTCTACCGACATCGACATATCGTGTTCGTCGTCGGAAGCTATTTCTCCAATCAACGATGCTTTGAAGAAGTCGTTGGGTCTCGGAGAGTCGGTGGCGACCGGTGAGCATCCATCGACGCCGAATTCCTCGACTACGTGTTCGTCGGTCGAGGCGGCCGCCGGTGGTAGAGATTCAGCCAAGAGTGGGGAGGTGAAAGTGGATGGACGAAAAAAGAAGGAGAAAAGAGAAAAAGGGCCAAGATTTGCGTTCTTGACCAAGTCTGAAATTGATAACCTTGAAGATGGGTATAGATGGAGAAAATATGGGCAAAAAGCTGTAAAAAACAGCCCTTTTCCAAGTGTGAAAAAGAGAGTAGAAAGATCATCAGAAGATCCATGTTTTGTTGTAACAACGTACGAAGGGAAACACAACCACTACTGTCCGATTACACTTCGAGGGCACAATGTGGCCGGAGTTTATCCGCCGTCGGCTTCACCGTCGTTGATTCCGGCGAGAATCTTGGCCGGCGAGTTCTATGGAGGGGTGGATGTGCAGCAACAATATTACGAGGTTCCTGGGTATGGGGTGTTGGAAGATCTGGTAAATCCAAAGCAAAACCCATGA 717 46.3 MSNNEDHEKDPYYPNFEAFDPSNVGFYSDFLYDYNNFLSTDIDISCSSSEAISPINDALKKSLGLGESVATGEHPSTPNSSTTCSSVEAAAGGRDSAKSGEVKVDGRKKKEKREKGPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPFPSVKKRVERSSEDPCFVVTTYEGKHNHYCPITLRGHNVAGVYPPSASPSLIPARILAGEFYGGVDVQQQYYEVPGYGVLEDLVNPKQNP 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1380500 1381640 + CmoCh20G002840.1 Cmo20g00284 404601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00284 238 SMART WRKY_cls 130 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g00284 238 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 191 IPR044810 GO:0003700
Cmo20g00284 238 MobiDBLite consensus disorder prediction 72 89 - -
Cmo20g00284 238 ProSiteProfiles WRKY domain profile. 125 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g00284 238 MobiDBLite consensus disorder prediction 68 111 - -
Cmo20g00284 238 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 14 191 - -
Cmo20g00284 238 Pfam WRKY DNA -binding domain 131 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g00284 238 SUPERFAMILY WRKY DNA-binding domain 123 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo20g00284 238 Gene3D WRKY domain 117 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g02044 Cmo20g00284 CCT
Cmo11g02044 Cmo20g00284 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g00284 Cmo-Chr20:1380500 Cmo17g00367 Cmo-Chr17:2255107 2.65E-36 dispersed
Cmo11g02044 Cmo-Chr11:13877109 Cmo20g00284 Cmo-Chr20:1380500 6.58E-46 wgd
Cmo19g01110 Cmo-Chr19:9444514 Cmo20g00284 Cmo-Chr20:1380500 1.28E-46 wgd
Cmo20g00284 Cmo-Chr20:1380500 Cmo03g01374 Cmo-Chr3:10098164 4.97E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11706 PF03106 WRKY 1.40E-06 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00284 - - cmos:111448234 456.447