Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00285 ATGGCGTCCGGGAACTCGTTGAATGATCATTTATCTAAGAAGACTTCATTTTGGGGCTTGTCATTGTGGGTTTTGATATGCATTTGCATTGGTGCATTCATAGTTTTGATTCTTGGTTTGTTATCCATCTGGATCCTGTTTCGAAAAAAATCTAAAAGATCCATGGACAAGCTCCCCATTTCCCAGATACCTAATTTTTCAAAAGATATCAGGATAGATCAGGTTGGGACTCAAATTCCCAATGATCACCCTGAAAATAGGCTTCTTTCTGTTGATGTCAAGAGAAATCTTGAACATTCTGAAGTTATGGCTATCACGAAATCGAGTGAACCTGATAACAATAGCCAATGTAGTTCTACTTATCAACACGAAAAAGTTGGCAATTCACAATCTGGGGAAGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTCGAGGTCGCATGGTGGATATGGAGGAATTGTGCCACCGTCTCCTCTCGTTGGCTTGCCAGAAATTTCGCATCTTGGGTGGGGTCATTGGTTCACTCTCAGGGATCTAGAGCTTGCTACGAATCGTTTTTCGACTGAGAATATTCTTGGGGAAGGAGGATATGGAGTTGTGTATAAGGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCGACATAAGAATCTTGTCCGACTGCTCGGTTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAGTATGTGAACAATGGAAATCTAGAACAGTGGCTACACGGAGCCATGAGCCAACACGGCACGTTTACTTGGGAGGCTCGCATGAGGGTGCTTCTTGGCACGGCTAAGGCGCTTGCCTATTTACACGAAGCAATCGAGCCGAAAGTTGTTCATAGAGATATCAAATCGAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTACGTGGCACCAGAATATGCAAATACGGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTTGGCGTTCTCCTGCTAGAAGCAATTACCGGGAGGGACCCTGTGGACTATGCTCGTCCTTCTAATGAGGTTAATCTTGTCGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACACGAACCTTGAGACCAAGCCAACAACTCGTGCTTTAAAACGTGCCCTTCTTGTCGCACTTCGATGTATCGATCCAGAATCAATCAAGAGACCGAAGATGAGTCAAGTTGTACGAATGCTCGAAGCGGACGAATTTCCACTGCACGAGGATAGAAGGAACCGAAAAAGCCGATCAATAAGCTTGGAGATCGAGTCGATGAAAGAAATATCAGGTTCAGAAGCGACGGGTGGGCCATCGGAGAGCCATAAATCAGAGACAAACCATGGATAG 1524 44.29 MASGNSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSIWILFRKKSKRSMDKLPISQIPNFSKDIRIDQVGTQIPNDHPENRLLSVDVKRNLEHSEVMAITKSSEPDNNSQCSSTYQHEKVGNSQSGEEGSSGNARKQASRSHGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTFTWEARMRVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDTNLETKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIESMKEISGSEATGGPSESHKSETNHG 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1382946 1386099 - CmoCh20G002850.1 Cmo20g00285 404602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00285 507 Coils Coil 207 227 - -
Cmo20g00285 507 Pfam Protein kinase domain 188 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00285 507 Gene3D Transferase(Phosphotransferase) domain 1 263 476 - -
Cmo20g00285 507 MobiDBLite consensus disorder prediction 466 507 - -
Cmo20g00285 507 MobiDBLite consensus disorder prediction 104 153 - -
Cmo20g00285 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cmo20g00285 507 Gene3D Phosphorylase Kinase; domain 1 169 262 - -
Cmo20g00285 507 MobiDBLite consensus disorder prediction 466 480 - -
Cmo20g00285 507 PANTHER OS01G0323000 PROTEIN 3 497 - -
Cmo20g00285 507 PANTHER OS10G0497600 PROTEIN 3 497 - -
Cmo20g00285 507 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524
Cmo20g00285 507 ProSiteProfiles Protein kinase domain profile. 187 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00285 507 SMART serkin_6 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00285 507 SUPERFAMILY Protein kinase-like (PK-like) 171 463 IPR011009 -
Cmo20g00285 507 MobiDBLite consensus disorder prediction 104 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g02045 Cmo20g00285 CCT
Cmo02g00038 Cmo20g00285 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00387 Cmo-Chr17:2404272 Cmo20g00285 Cmo-Chr20:1382946 0 dispersed
Cmo11g02045 Cmo-Chr11:13879578 Cmo20g00285 Cmo-Chr20:1382946 0 wgd
Cmo19g01111 Cmo-Chr19:9447468 Cmo20g00285 Cmo-Chr20:1382946 0 wgd
Cmo02g00038 Cmo-Chr2:209735 Cmo20g00285 Cmo-Chr20:1382946 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75140 PF00069 Pkinase 1.20E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00285 - - csv:101214087 936.406