Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00287 ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTGTCCCCCTCCGCCTCCGACATCCTCGGCGAATCCCGCGTCACCATGAGGAAAACCGGTGGCAGACCCAAGCCCGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCGCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTGTCCGCCGACCCCGAGACGTTCGCCAAAAACAGGGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTTGGGGCTCTGGGGTGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCCATTTGGGCGTGTCAGGTTGTGCTGATGGGTGCGGTTGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATTTACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTTGCAGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACTGGCAAAGGACCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTACCTGGAAAGTGA 804 57.96 MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1389168 1389971 - CmoCh20G002870.1 Cmo20g00287 404604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00287 267 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Cmo20g00287 267 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 267 - -
Cmo20g00287 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Cmo20g00287 267 MobiDBLite consensus disorder prediction 29 48 - -
Cmo20g00287 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Cmo20g00287 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 267 IPR001344 GO:0009765|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00036 Cmo20g00287 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00935 Cmo-Chr1:5416812 Cmo20g00287 Cmo-Chr20:1389168 5.51E-68 dispersed
Cmo07g00129 Cmo-Chr7:701442 Cmo20g00287 Cmo-Chr20:1389168 0 dispersed
Cmo07g00130 Cmo-Chr7:703094 Cmo20g00287 Cmo-Chr20:1389168 0 dispersed
Cmo13g00573 Cmo-Chr13:6475233 Cmo20g00287 Cmo-Chr20:1389168 0 dispersed
Cmo14g00978 Cmo-Chr14:5235919 Cmo20g00287 Cmo-Chr20:1389168 7.91E-168 dispersed
Cmo19g00879 Cmo-Chr19:8410679 Cmo20g00287 Cmo-Chr20:1389168 1.12E-139 dispersed
Cmo02g00036 Cmo-Chr2:207147 Cmo20g00287 Cmo-Chr20:1389168 0 wgd
Cmo20g00287 Cmo-Chr20:1389168 Cmo03g01376 Cmo-Chr3:10108407 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00287 K08912 - csv:101213845 535.028