Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00311 ATGACTATGATGGTCGCTGCAAGAGTAATCGCAGCCACAACAGCTCGATCAGTGGTGCGATCGACCAGGCTCCCTCTTCAATCTCCATCGCTATATGTGTTTGCTCAGCGGAAATCTCACTCCCACACGCTTCTCATTCGTCAGATGAGCTCCGAGGCGCCGAGCGTTGTTACTCGTCTTCAAAGTTCTGGATTGTTTCGAAGCCAAGGCCTTATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCTTTAAGGTTCATAATCCAGCCAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAAACCGATGATGCTATTTCTTCAGCTCATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGGAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGCTTGGACAACTGATAACCTTGGAACAAGGAAAACCCTTAAAGGAAGCTATGGGTGAGGTTACCTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAAGCAAAGCGAGTATATGGTGACATAATCTCACCAACTTTAGCGGATCGACGACTCTTTGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCATTGGCTATGATTACAAGAAAGGCTGGTCCCCTTCATGAGTATTTGTGTTCAATTGTTTATGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCTGCGGAACTTACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTGCAGGAGTCGTGAATGTGGTTATGGGAGATGCTCCAGCTGTTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACGGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCCCCTTGCATAGTCTTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCCATTGCAGCGAAGTTCCGAAATACTGGACAGACTTGTGTTTGTGCGAATAGAATTTTTGTTCAAGAAGGTATATACGAGAAATTTGCTGATGCTTTCTCAAAAGCTGTGCAAAGTCTGCAAGTTGGTGATGGTTTCGGGGAAGGTGTATCTCTGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCAAAAGTTCTTCTTGGAGGTAAAAGACACAGCCTTGGAATGACATTTTTTGAGCCTACAGTTCTTACTGACGTGAAGAATGACATGCTTTTATCCAGGGAGGAAATATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAGTATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATACGGATTGGTTGGTGTTAATGAAGGCTTGATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGTCGGGAGGGGTCAAAATATGGGCTGGACGAGTATCTTGAGCTGAAATATGTTTGCCTGGGAAACATGGGCGGCAACTAG 1671 45.72 MTMMVAARVIAATTARSVVRSTRLPLQSPSLYVFAQRKSHSHTLLIRQMSSEAPSVVTRLQSSGLFRSQGLIGGKWIDAYDGKTFKVHNPANGEVITNVPLMGKRETDDAISSAHDAFKSWSKLTAADRSNRLRKWYELLIAHKEELGQLITLEQGKPLKEAMGEVTYGASFIEFFSEEAKRVYGDIISPTLADRRLFVLKQPVGVVGVITPWNFPLAMITRKAGPLHEYLCSIVYVGPALACGCTVVIKPAELTPLTALAAAELSLQAGIPAGVVNVVMGDAPAVGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIVFDDADVDVAVKGAIAAKFRNTGQTCVCANRIFVQEGIYEKFADAFSKAVQSLQVGDGFGEGVSLGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVLTDVKNDMLLSREEIFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNSIQRSWRVTEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGLDEYLELKYVCLGNMGGN 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1515459 1527780 + CmoCh20G003110.1 Cmo20g00311 404628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00311 556 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 324 331 IPR029510 GO:0016491
Cmo20g00311 556 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 553 - -
Cmo20g00311 556 CDD ALDH_F5_SSADH_GabD 87 550 - -
Cmo20g00311 556 SUPERFAMILY ALDH-like 65 552 IPR016161 GO:0016491
Cmo20g00311 556 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 63 553 - -
Cmo20g00311 556 Pfam Aldehyde dehydrogenase family 76 548 IPR015590 GO:0016491
Cmo20g00311 556 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 352 363 IPR016160 GO:0016491
Cmo20g00311 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 82 542 IPR016162 GO:0016491
Cmo20g00311 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 328 517 IPR016163 GO:0016620
Cmo20g00311 556 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 87 546 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00888 Cmo-Chr3:6890483 Cmo20g00311 Cmo-Chr20:1515459 7.64E-53 dispersed
Cmo11g01452 Cmo-Chr11:10209597 Cmo20g00311 Cmo-Chr20:1515459 3.73E-67 dispersed
Cmo12g00001 Cmo-Chr12:477 Cmo20g00311 Cmo-Chr20:1515459 3.13E-108 dispersed
Cmo17g00356 Cmo-Chr17:2168133 Cmo20g00311 Cmo-Chr20:1515459 1.66E-62 dispersed
Cmo17g00659 Cmo-Chr17:6835216 Cmo20g00311 Cmo-Chr20:1515459 2.24E-61 transposed
Cmo02g00667 Cmo-Chr2:4194807 Cmo20g00311 Cmo-Chr20:1515459 1.96E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00311 K17761 - csv:101217352 913.294