Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00312 ATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACCCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGGCTCGGGAAACAACCCCACAAAGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCGACCTTAATGGAGCGTAGTATGAACGAAATGCAATTGGAAGTTCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAAGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTAGCCGGCGAAAACATGGCCGTCGCCAGCACCGCCGCCGGACCTTTCAAAACCACTTCCAACAATGTGGGAACAACCAGTACCAACCTTGTTCCAGACACCGCCATCAAAGACTTCATTTCACCTCATCCACCTCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTACCTCCGAACCGCCGCCGCCGCCTCCCCCGCCTCTCATCGACTGCCTCAAGAAGCCTAGCCCCTTCATCTCTGGAGCTGGTAAGGCCCCCATTTTCTGGCCCGACGATCTCCGACTCCAGCACTTAGGAACCCCTTCAGCCACCTTAGTACCGCCGCCGCCTTCCATTGGCAGCCCACCGGACTTGGACTCTCTACAACTGGAAATGTATGAATCAAAACCGCCACCCCTGTCACCGCTGCTCGTTGGCAACGACGCGATCAATGAAAAGAAGTTTGAAGCATCGGTAAAGCTTGAGAGGCCGTCGCCACGGCAGTCGTCGGGACACTCCGACGAAAGGGTGAATAATAATAATAACGGTATGCCCAACAATAGTAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1101 52.23 MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASAMELQRNSGSSSTLMERSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAVASTAAGPFKTTSNNVGTTSTNLVPDTAIKDFISPHPPHTFPPFQDMNNLFTSEPPPPPPPPLIDCLKKPSPFISGAGKAPIFWPDDLRLQHLGTPSATLVPPPPSIGSPPDLDSLQLEMYESKPPPLSPLLVGNDAINEKKFEASVKLERPSPRQSSGHSDERVNNNNNGMPNNSNPTMSQPQGRNSSFG 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1530207 1533405 + CmoCh20G003120.1 Cmo20g00312 404629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00312 366 MobiDBLite consensus disorder prediction 1 24 - -
Cmo20g00312 366 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cmo20g00312 366 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cmo20g00312 366 MobiDBLite consensus disorder prediction 326 366 - -
Cmo20g00312 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 228 IPR044848 GO:0003700
Cmo20g00312 366 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cmo20g00312 366 MobiDBLite consensus disorder prediction 270 289 - -
Cmo20g00312 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cmo20g00312 366 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cmo20g00312 366 MobiDBLite consensus disorder prediction 318 366 - -
Cmo20g00312 366 Gene3D - 32 90 - -
Cmo20g00312 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00667 Cmo-Chr2:4194807 Cmo20g00312 Cmo-Chr20:1530207 2.12E-121 dispersed
Cmo10g01273 Cmo-Chr10:13133524 Cmo20g00312 Cmo-Chr20:1530207 8.12E-112 dispersed
Cmo05g00868 Cmo-Chr5:5707748 Cmo20g00312 Cmo-Chr20:1530207 5.48E-47 transposed
Cmo19g01150 Cmo-Chr19:9659420 Cmo20g00312 Cmo-Chr20:1530207 1.20E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11711 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00312 - - cmos:111448435 704.131