Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00312 | ATGTTCCATACCACCAAGAAGCCCTCCTCTATGACTCCTCATGATAGGCCAATGTGTGTCCAAGGAGATTCTGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACTCCCAAGACGATCATGAGGGTCATGGGCGTCAAGGGCCTCACCCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGGCTCGGGAAACAACCCCACAAAGAATTCAACGATCAATCGATAAAGGATGGCATGAGAGCTTCCGCCATGGAACTTCAGAGAAACAGTGGATCTTCTTCGACCTTAATGGAGCGTAGTATGAACGAAATGCAATTGGAAGTTCAGAGACGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAAGCTCAAGGCAAGTACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTAGCCGGCGAAAACATGGCCGTCGCCAGCACCGCCGCCGGACCTTTCAAAACCACTTCCAACAATGTGGGAACAACCAGTACCAACCTTGTTCCAGACACCGCCATCAAAGACTTCATTTCACCTCATCCACCTCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTACCTCCGAACCGCCGCCGCCGCCTCCCCCGCCTCTCATCGACTGCCTCAAGAAGCCTAGCCCCTTCATCTCTGGAGCTGGTAAGGCCCCCATTTTCTGGCCCGACGATCTCCGACTCCAGCACTTAGGAACCCCTTCAGCCACCTTAGTACCGCCGCCGCCTTCCATTGGCAGCCCACCGGACTTGGACTCTCTACAACTGGAAATGTATGAATCAAAACCGCCACCCCTGTCACCGCTGCTCGTTGGCAACGACGCGATCAATGAAAAGAAGTTTGAAGCATCGGTAAAGCTTGAGAGGCCGTCGCCACGGCAGTCGTCGGGACACTCCGACGAAAGGGTGAATAATAATAATAACGGTATGCCCAACAATAGTAACCCTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA | 1101 | 52.23 | MFHTTKKPSSMTPHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASAMELQRNSGSSSTLMERSMNEMQLEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAVASTAAGPFKTTSNNVGTTSTNLVPDTAIKDFISPHPPHTFPPFQDMNNLFTSEPPPPPPPPLIDCLKKPSPFISGAGKAPIFWPDDLRLQHLGTPSATLVPPPPSIGSPPDLDSLQLEMYESKPPPLSPLLVGNDAINEKKFEASVKLERPSPRQSSGHSDERVNNNNNGMPNNSNPTMSQPQGRNSSFG | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1530207 | 1533405 | + | CmoCh20G003120.1 | Cmo20g00312 | 404629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00312 | 366 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo20g00312 | 366 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Cmo20g00312 | 366 | Pfam | Myb-like DNA-binding domain | 36 | 84 | IPR001005 | - | |
Cmo20g00312 | 366 | MobiDBLite | consensus disorder prediction | 326 | 366 | - | - | |
Cmo20g00312 | 366 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 228 | IPR044848 | GO:0003700 | |
Cmo20g00312 | 366 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Cmo20g00312 | 366 | MobiDBLite | consensus disorder prediction | 270 | 289 | - | - | |
Cmo20g00312 | 366 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Cmo20g00312 | 366 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677 | |
Cmo20g00312 | 366 | MobiDBLite | consensus disorder prediction | 318 | 366 | - | - | |
Cmo20g00312 | 366 | Gene3D | - | 32 | 90 | - | - | |
Cmo20g00312 | 366 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 228 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00667 | Cmo-Chr2:4194807 | Cmo20g00312 | Cmo-Chr20:1530207 | 2.12E-121 | dispersed | |
Cmo10g01273 | Cmo-Chr10:13133524 | Cmo20g00312 | Cmo-Chr20:1530207 | 8.12E-112 | dispersed | |
Cmo05g00868 | Cmo-Chr5:5707748 | Cmo20g00312 | Cmo-Chr20:1530207 | 5.48E-47 | transposed | |
Cmo19g01150 | Cmo-Chr19:9659420 | Cmo20g00312 | Cmo-Chr20:1530207 | 1.20E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11711 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00312 | - | - | cmos:111448435 | 704.131 |