Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00327 ATGAAGTTCTATTCAGCATCGTTGTTTCCTTTGTTTTTTGTTATTGTTAATCTACTTCCCTTTGCCATTGCCGACCTCGAATCCGACAAGCAAGCTCTTCTTGACTTTGCATCTTCGGTTCCACATCGACGGAGCCTCAACTGGAACGACACTGCCTTTGTATGCACAACTTGGGTTGGCATTACTTGCAGTGAAGATGGAACTCATGTGGTTACCCTCCGGTTACCGGGGATCGGACTTGTTGGTTCGATTCCTTCTAACACTCTAGGGAAACTTCATGGTCTCAAGGTTCTTAGTCTCCGTTCCAATCTCCTTAGCGGAAAAATACCGTCCGATATCACCTCACTTCCTTCTCTTCAGTATCTTTTTCTCCAACGGAATAACTTCTCTGGTGGTGTTCCGTCCTCCGTTTCGCCTACTCTTAACGTATTGGACCTATCGTTCAATTCATTAGAAGGGAAGATTCCAAAGTCTATACAAAATTTGACACAACTAACTGGATTGAACCTTCAGAACAACAATCTTTCTGGTTCTATACCGGATATCGACCTCCCGAAGCTCAAGCATTTCAATATAAGCTATAACCATCTCGTTGGTTCTATTCCGACTTCTTTGAATACATTCCCGAGTTCGTCGTTCATTGGAAATCCTTCATTATGTGGAGCGCCTGTAAACGCTTGCTCTGTAGACCTTTCTCCAGCTCCTAATGCTCCATCTTCACCTGCCATTTCTCAAAAGCAGAGCTCGAAAAAACTGAAGATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTCTTCCTTCTATTCCTCGGAGTTCTTTTTATGGTTTTGTGTTGTTTAAGGAAAAAGGACGGTGAACGCTCCGGCACGAGAAAAGGGAAGGTATCGGGTGGCGGGAGAAGTGAAAAACCGAAAGAGGAGTTCGGTAGTGGCGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTTTTTGAAGGCTGTTCGTTTAACTTCGATCTTGAAGATCTATTGAGAGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTCTGGAGGAACCTACCACTGTTGTCGTGAAAAGGTTGAAGGAAGTGGTGGTGGGGAAGAGGGAGTTTGAACAACAAATGGAGATTGTGGGAAGGATCACGCAGCACCCGAACGTCATGCCACTCCGAGCGTATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTACGTCCCGGGAGGCAGCTTGTCGTCACTTTTGCATGGAAACAGAGGAGGGGAAAGAACTCCGCTCGACTGGGACTCGAGAGTGAAGATCGCTCTTGCAACGGCGAAGGGAATTGCTCATATCCATACAGTGGGCGGTCCGAAATTCACCCATGGAAATATCAAGGCCTCAAACGTTCTCCTAACTCAAGATGTGAATGCCTGTGTTTCCGACTTTGGCCTTACTCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGATTATCGTGCGCCCGAGGTGATCGAAGCTCGGAAACACACACACAAGTCAGATGTTTACAGCTTTGGTGTTCTTCTTCTCGAAATGTTGACTGGAAAAGCTCCCCTGCAATCACCACGTCGTGACGATATGGTCGATCTCCCTCGGTGGGTCCAGTCTGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTCGAGCTAATGAGGTACCAGAATATCGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCGAAGTTGCCCGACATGAGACCGAGCATGGACGAAGTCGTTAGAATGATCGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCGTCCGAAGAGAACAAATCGAAGGACTCAAATGTGCAGACCCCATGA 1893 46.38 MKFYSASLFPLFFVIVNLLPFAIADLESDKQALLDFASSVPHRRSLNWNDTAFVCTTWVGITCSEDGTHVVTLRLPGIGLVGSIPSNTLGKLHGLKVLSLRSNLLSGKIPSDITSLPSLQYLFLQRNNFSGGVPSSVSPTLNVLDLSFNSLEGKIPKSIQNLTQLTGLNLQNNNLSGSIPDIDLPKLKHFNISYNHLVGSIPTSLNTFPSSSFIGNPSLCGAPVNACSVDLSPAPNAPSSPAISQKQSSKKLKMGVIIAIAVGGFFLLFLGVLFMVLCCLRKKDGERSGTRKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMEIVGRITQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDSRVKIALATAKGIAHIHTVGGPKFTHGNIKASNVLLTQDVNACVSDFGLTPLMNVPTSRTADYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPRRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1600161 1603141 - CmoCh20G003270.1 Cmo20g00327 404644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00327 630 PANTHER OS05G0588300 PROTEIN 10 630 - -
Cmo20g00327 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Cmo20g00327 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00327 630 MobiDBLite consensus disorder prediction 605 621 - -
Cmo20g00327 630 PANTHER RECEPTOR-LIKE KINASE 10 630 - -
Cmo20g00327 630 CDD STKc_IRAK 343 606 - -
Cmo20g00327 630 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Cmo20g00327 630 MobiDBLite consensus disorder prediction 605 630 - -
Cmo20g00327 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cmo20g00327 630 SUPERFAMILY L domain-like 39 223 - -
Cmo20g00327 630 Pfam Protein kinase domain 340 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g00327 630 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Cmo20g00327 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524
Cmo20g00327 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515
Cmo20g00327 630 MobiDBLite consensus disorder prediction 286 311 - -
Cmo20g00327 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Cmo20g00327 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515
Cmo20g00327 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00851 Cmo20g00327 CCT
Cmo11g00851 Cmo20g00327 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00295 Cmo-Chr3:4176895 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo05g01333 Cmo-Chr5:10335096 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo07g01252 Cmo-Chr7:6859505 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo10g00631 Cmo-Chr10:2860458 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo11g00588 Cmo-Chr11:2841086 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo12g01258 Cmo-Chr12:11166731 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo15g01332 Cmo-Chr15:9137087 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo16g00084 Cmo-Chr16:387197 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo18g01322 Cmo-Chr18:12578033 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo02g00689 Cmo-Chr2:4354239 Cmo20g00327 Cmo-Chr20:1600161 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75142 PF00069 Pkinase 6.10E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00327 - - csv:101221378 1089.72