Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00331 ATGGATCTCCTCCTCCTTGAGAAGGCTCTAATCGGCCTCTTCATCGCCATGGTTCTTGCCATCGCCATTTCCAAGATACGCGGAAAGCGATTCAAGCTTCCGCCGGGGCCGTTGCCGGTGCCTATATTCGGAAACTGGCTCCAGGTCGGCGATGACTTGAACCACCGCAATCTGACAGATCTCGCCAAGAAATTCGGCGATATTTTCATGCTCCGGATGGGACAGAGGAGCCTCGTGGTGGTTTCCTCGCCGGAACTGGCCAAGGAAGTGCTCCACACGCAGGGAGTCGAGTTTGGATCTCGAACCAGAAACGTCGTTTTCGACATCTTCACCGGTAAAGGTCAGGATATGGTTTTCACCGTATATGGCGAGCATTGGAGGAAAATGAGACGGATCATGACAGTTCCGTTTTTCACTAACAAAGTGGTCCAGCAATACCGTCAGGGATGGGAGGACGAGGCCGCTAGTGTAGTGGAGGATGTGAAGAAGAATCCAGAATCGGCGACGACCGGAGTCGTTCTCCGGCGGCGATTACAGCTTATGATGTACAACAACATGTACAGGATTATGTTCGATAGAAGATTCGAGAGTGAAGACGATCCTCTGTTTCTCAAACTTAGGGCTCTGAACGGAGAGAGGAGCCGATTAGCGCAGAGCTTCGATTACAACTATGGCGACTTCATCCCTATCTTGAGGCCGTTCTTGAGAGGATATCTCAAAACGTGCAAGGAAGTCAAGGAAACAAGGCTCAAACTCTTCAAGGATTATTTCGTCGATGAGAGGAAGAAATTGACGAACACGAAGAAGACGACGAACGAGGGATTGAAATGTGCAATTGATCATATGTTGGATGCGCAACAGAAGGGAGAAATCAACGAAGACAATCTGCTTTACATTGTTGAGAATATCAATGTTGCAGCAATTGAAACAACGTTGTGGTCAATTGAATGGGGCATTGCGGAGCTAGTGAACCACCCAGAAATCCAAAGGAAGTTAAGGAATGAGCTCGACACTGTACTCGGACCCGGGGTTCAAATTACTGAGCCGGACGCCATCAAGCTCCCATACCTCCAAGCCGTGATCAAGGAGACCCTCCGCCTTCGCATGGCCATTCCTTTGCTTGTGCCCCATATGAACCTCCACAATGCCAAGCTAGGCGGCTACGACATTCCAGCTGAGAGCAAGATCTTGGTCAATGCATGGTTGCTAGCCAACAACCCTGCCAACTGGAAGAACCCAGAAGAGTTCCGCCCCGAGAGGTTCTTGGAGGAGGAGTCCAAGGTAGAGGCCAACGGCAACGATTTCAGATACCTACCCTTCGGTGTTGGGCGAAGGAGCTGCCCTGGCATCATCCTGGCTTTGCCTATCCTTGCCATTACAATTGGGCGTTTGGTTCAGAACTTTGAGCTCCTTCCCCCTCCTGGTCACTCCAAGTTGGACACCACAGAAAAAGGTGGGCAATTTAGCTTGCACATATTGAAGCACTCCACCATTGTTGCTAAGCCCAGGGTGTTCTAG 1518 50.4 MDLLLLEKALIGLFIAMVLAIAISKIRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFMLRMGQRSLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRQGWEDEAASVVEDVKKNPESATTGVVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFLKLRALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKTCKEVKETRLKLFKDYFVDERKKLTNTKKTTNEGLKCAIDHMLDAQQKGEINEDNLLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVQITEPDAIKLPYLQAVIKETLRLRMAIPLLVPHMNLHNAKLGGYDIPAESKILVNAWLLANNPANWKNPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILAITIGRLVQNFELLPPPGHSKLDTTEKGGQFSLHILKHSTIVAKPRVF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1614881 1617415 + CmoCh20G003310.1 Cmo20g00331 404648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00331 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Cmo20g00331 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Cmo20g00331 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 Gene3D Cytochrome P450 23 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g00331 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00764 Cmo20g00331 CCT
Cmo11g00932 Cmo20g00331 CCT
Cmo02g00692 Cmo20g00331 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00764 Cmo-Chr1:3948495 Cmo20g00331 Cmo-Chr20:1614881 0 dispersed
Cmo05g00770 Cmo-Chr5:4362984 Cmo20g00331 Cmo-Chr20:1614881 0 dispersed
Cmo12g00931 Cmo-Chr12:8654799 Cmo20g00331 Cmo-Chr20:1614881 0 dispersed
Cmo20g00331 Cmo-Chr20:1614881 Cmo14g00506 Cmo-Chr14:2503246 1.10E-92 dispersed
Cmo02g00692 Cmo-Chr2:4371550 Cmo20g00331 Cmo-Chr20:1614881 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00331 K00487 - csv:101221846 932.169