Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00333 ATGCAGGATCCAGCGCCATCAAACCCTATCCACAGTCCAAATTCCAATCAAATTCCTCCACTCCATGCTGCACTGCCGCCGCCGGCGGCTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCCTCGTCGATGTTTGCGAATGCCGGCAATGGCTCATTCGTGCCTAGAGCGGGGTCTCATCATCGGAGGGCTCATTCGGAAGTTAGCTTCCGGTTGCAGGAGGACATGATGGATATATCCGCGTCGGATCCGTTCAACGGCGGTTCGTCGACGGCCAGTCTGGAGGAGATCGGATCGGAGGATGATCTATTTTCGACCTACATTGACGTGAAGAAGTTTGGAGGTAATGGAGGAGGAAATTTCGTGGATCATGATGCCAATGGTGGAAGTGAAGGCGCTGGTGGTAATGAGGAAGAGAAGACTTCGAAGCCAAGGCATCGGCATAGCGTTTCGGTGGACGGAACAACGTCGTCGTCGAGCATGTTTGGGGAGATTATGGAAGCGAAGAAAGCCATGCCTCCTGATAAGTTGGCTGAGCTTTGGAGCAGTGATCCCAAACGCGCCAAAAGGATATTGGCAAATCGACAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCACGATATATACAAGAGTTGGAGCGCAAGGTGCAAACCCTTCAAACGGAAGCAACTACTCTATCAGCCCAATTGACTCTCTTCCAGCGAGACACAACGGGTCTCAGTACTGAGAATACAGAGCTTAAGCTTCGTTTGCAGGCTATGGAGCAACAAGCCCAAATGCGTGATGCTTTGAACGAAGCATTGAAGAAGGAAGTTGAGAGGCTTAAAATTGCTACTGGAGAAATGATGAGCCCTTCCGAGTCTTTTAACTTGGGAATGCATCACATGGCATACGCCCCATCGTCTTTCATTCAACTTTCACAGCAACCAGGGTCTGCTGGCCCTCAAAACATTCAAATGCCACCATATAACCATTCCCCATCCAACGTGTCTAGCCATCCTCTGCATCCATCAGACTCTCATTCTCTCTCGGAGGTGCTACAAAGCGACCCTCTCGGTCGATTACAGGGTCTCGATATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGACCCTTCTCTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1158 50.95 MQDPAPSNPIHSPNSNQIPPLHAALPPPAAHKPPPVANATASSSMFANAGNGSFVPRAGSHHRRAHSEVSFRLQEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKFGGNGGGNFVDHDANGGSEGAGGNEEEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQMRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQPGSAGPQNIQMPPYNHSPSNVSSHPLHPSDSHSLSEVLQSDPLGRLQGLDISSKGSSLVKSEDPSLSASESSTTF 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1631748 1635604 + CmoCh20G003330.1 Cmo20g00333 404650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00333 385 MobiDBLite consensus disorder prediction 360 385 - -
Cmo20g00333 385 MobiDBLite consensus disorder prediction 137 151 - -
Cmo20g00333 385 Pfam bZIP transcription factor 187 235 IPR004827 GO:0003700|GO:0006355
Cmo20g00333 385 MobiDBLite consensus disorder prediction 307 385 - -
Cmo20g00333 385 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700|GO:0006355
Cmo20g00333 385 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700|GO:0006355
Cmo20g00333 385 MobiDBLite consensus disorder prediction 20 34 - -
Cmo20g00333 385 MobiDBLite consensus disorder prediction 122 160 - -
Cmo20g00333 385 MobiDBLite consensus disorder prediction 307 350 - -
Cmo20g00333 385 MobiDBLite consensus disorder prediction 1 19 - -
Cmo20g00333 385 MobiDBLite consensus disorder prediction 1 51 - -
Cmo20g00333 385 Coils Coil 252 282 - -
Cmo20g00333 385 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 382 - -
Cmo20g00333 385 Coils Coil 203 230 - -
Cmo20g00333 385 PANTHER ATBZIP TRANSCRIPTION FACTOR 4 382 - -
Cmo20g00333 385 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Cmo20g00333 385 SUPERFAMILY Leucine zipper domain 187 238 IPR046347 GO:0003700|GO:0006355
Cmo20g00333 385 Gene3D - 186 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00761 Cmo20g00333 CCT
Cmo02g00697 Cmo20g00333 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00761 Cmo-Chr1:3928092 Cmo20g00333 Cmo-Chr20:1631748 1.45E-155 dispersed
Cmo01g01038 Cmo-Chr1:8193096 Cmo20g00333 Cmo-Chr20:1631748 3.60E-54 dispersed
Cmo04g00103 Cmo-Chr4:550396 Cmo20g00333 Cmo-Chr20:1631748 1.99E-111 dispersed
Cmo04g01130 Cmo-Chr4:5771503 Cmo20g00333 Cmo-Chr20:1631748 2.21E-105 dispersed
Cmo06g01610 Cmo-Chr6:11262263 Cmo20g00333 Cmo-Chr20:1631748 4.78E-51 dispersed
Cmo09g01090 Cmo-Chr9:6006833 Cmo20g00333 Cmo-Chr20:1631748 4.60E-60 dispersed
Cmo14g01553 Cmo-Chr14:12395349 Cmo20g00333 Cmo-Chr20:1631748 8.50E-55 dispersed
Cmo19g00711 Cmo-Chr19:7459367 Cmo20g00333 Cmo-Chr20:1631748 1.39E-51 dispersed
Cmo19g00713 Cmo-Chr19:7466810 Cmo20g00333 Cmo-Chr20:1631748 9.81E-52 dispersed
Cmo20g00648 Cmo-Chr20:3173495 Cmo20g00333 Cmo-Chr20:1631748 3.11E-20 dispersed
Cmo02g00697 Cmo-Chr2:4402783 Cmo20g00333 Cmo-Chr20:1631748 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11714 PF00170 bZIP_1 1.40E-08 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00333 - - csv:101205663 593.964